Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CDX1P47902 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDX1P47902 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC18.16■□□□□ 0.5
CDX1P47902 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CDX1P47902 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC18.16■□□□□ 0.5
CDX1P47902 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC18.16■□□□□ 0.5
CDX1P47902 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.16■□□□□ 0.5
CDX1P47902 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC18.16■□□□□ 0.5
CDX1P47902 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
CDX1P47902 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX1P47902 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX1P47902 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC18.15■□□□□ 0.5
CDX1P47902 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC18.15■□□□□ 0.5
CDX1P47902 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX1P47902 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC18.15■□□□□ 0.5
CDX1P47902 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX1P47902 CREM-229ENST00000474362 1030 ntTSL 2 BASIC18.15■□□□□ 0.5
CDX1P47902 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC18.15■□□□□ 0.5
CDX1P47902 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC18.15■□□□□ 0.5
CDX1P47902 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDX1P47902 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC18.15■□□□□ 0.5
CDX1P47902 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CDX1P47902 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CDX1P47902 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC18.15■□□□□ 0.5
CDX1P47902 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX1P47902 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX1P47902 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX1P47902 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX1P47902 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC18.14■□□□□ 0.49
CDX1P47902 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC18.14■□□□□ 0.49
CDX1P47902 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CDX1P47902 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
CDX1P47902 AC233723.2-201ENST00000623798 2106 ntBASIC18.14■□□□□ 0.49
CDX1P47902 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX1P47902 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX1P47902 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX1P47902 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX1P47902 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX1P47902 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX1P47902 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.13■□□□□ 0.49
CDX1P47902 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CDX1P47902 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX1P47902 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX1P47902 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX1P47902 PKD1P6-201ENST00000343738 4769 ntBASIC18.13■□□□□ 0.49
CDX1P47902 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX1P47902 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18.12■□□□□ 0.49
CDX1P47902 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CDX1P47902 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX1P47902 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CDX1P47902 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC18.12■□□□□ 0.49
CDX1P47902 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC18.12■□□□□ 0.49
CDX1P47902 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX1P47902 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX1P47902 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX1P47902 AL356441.2-201ENST00000443009 864 ntBASIC18.12■□□□□ 0.49
CDX1P47902 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC18.12■□□□□ 0.49
CDX1P47902 AC092028.1-203ENST00000608262 953 ntBASIC18.12■□□□□ 0.49
CDX1P47902 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX1P47902 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CDX1P47902 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC18.12■□□□□ 0.49
CDX1P47902 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
CDX1P47902 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC18.11■□□□□ 0.49
CDX1P47902 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CDX1P47902 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX1P47902 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX1P47902 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX1P47902 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC18.11■□□□□ 0.49
CDX1P47902 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC18.11■□□□□ 0.49
CDX1P47902 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC18.11■□□□□ 0.49
CDX1P47902 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC18.11■□□□□ 0.49
CDX1P47902 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
CDX1P47902 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX1P47902 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX1P47902 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX1P47902 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX1P47902 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX1P47902 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX1P47902 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CDX1P47902 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDX1P47902 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
CDX1P47902 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDX1P47902 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC18.1■□□□□ 0.49
CDX1P47902 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDX1P47902 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
CDX1P47902 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC18.1■□□□□ 0.49
CDX1P47902 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDX1P47902 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CDX1P47902 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CDX1P47902 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC18.1■□□□□ 0.49
CDX1P47902 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CDX1P47902 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDX1P47902 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDX1P47902 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CDX1P47902 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDX1P47902 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CDX1P47902 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDX1P47902 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDX1P47902 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CDX1P47902 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms