Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL1P09341 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL1P09341 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL1P09341 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL1P09341 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC17.44■□□□□ 0.38
CXCL1P09341 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.44■□□□□ 0.38
CXCL1P09341 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL1P09341 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL1P09341 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL1P09341 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL1P09341 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL1P09341 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC17.43■□□□□ 0.38
CXCL1P09341 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL1P09341 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL1P09341 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL1P09341 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL1P09341 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL1P09341 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL1P09341 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL1P09341 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CXCL1P09341 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL1P09341 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CXCL1P09341 AC007952.6-201ENST00000573168 2673 ntBASIC17.43■□□□□ 0.38
CXCL1P09341 AC003957.1-201ENST00000625108 2673 ntBASIC17.43■□□□□ 0.38
CXCL1P09341 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CXCL1P09341 C11orf96-202ENST00000528572 1834 ntBASIC17.42■□□□□ 0.38
CXCL1P09341 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CXCL1P09341 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CXCL1P09341 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CXCL1P09341 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CXCL1P09341 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CXCL1P09341 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC17.42■□□□□ 0.38
CXCL1P09341 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CXCL1P09341 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CXCL1P09341 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CXCL1P09341 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CXCL1P09341 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CXCL1P09341 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL1P09341 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CXCL1P09341 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL1P09341 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CXCL1P09341 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC17.41■□□□□ 0.38
CXCL1P09341 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC17.41■□□□□ 0.38
CXCL1P09341 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL1P09341 HGH1-207ENST00000628266 258 ntTSL 5 BASIC17.41■□□□□ 0.38
CXCL1P09341 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL1P09341 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.41■□□□□ 0.38
CXCL1P09341 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CXCL1P09341 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CXCL1P09341 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL1P09341 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL1P09341 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CXCL1P09341 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL1P09341 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL1P09341 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL1P09341 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL1P09341 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL1P09341 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL1P09341 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL1P09341 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CXCL1P09341 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CXCL1P09341 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
CXCL1P09341 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL1P09341 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL1P09341 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL1P09341 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC17.39■□□□□ 0.37
CXCL1P09341 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL1P09341 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL1P09341 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC17.39■□□□□ 0.37
CXCL1P09341 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CXCL1P09341 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CXCL1P09341 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CXCL1P09341 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.38■□□□□ 0.37
CXCL1P09341 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC17.38■□□□□ 0.37
CXCL1P09341 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CXCL1P09341 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CXCL1P09341 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CXCL1P09341 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CXCL1P09341 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC17.37■□□□□ 0.37
CXCL1P09341 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CXCL1P09341 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CXCL1P09341 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CXCL1P09341 HLA-V-202ENST00000446817 847 ntBASIC17.37■□□□□ 0.37
CXCL1P09341 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC17.37■□□□□ 0.37
CXCL1P09341 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CXCL1P09341 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CXCL1P09341 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CXCL1P09341 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CXCL1P09341 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.37■□□□□ 0.37
CXCL1P09341 AF106564.1-201ENST00000607058 2553 ntBASIC17.36■□□□□ 0.37
CXCL1P09341 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL1P09341 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL1P09341 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC17.36■□□□□ 0.37
CXCL1P09341 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL1P09341 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL1P09341 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL1P09341 DUX4L11-201ENST00000611504 1267 ntBASIC17.36■□□□□ 0.37
CXCL1P09341 MED25-210ENST00000612854 801 ntTSL 5 BASIC17.36■□□□□ 0.37
CXCL1P09341 DUX4L12-201ENST00000614593 1267 ntBASIC17.36■□□□□ 0.37
CXCL1P09341 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms