Protein–RNA interactions for Protein: P04049

RAF1, RAF proto-oncogene serine/threonine-protein kinase, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1P04049 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
RAF1P04049 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.26■□□□□ 0.83
RAF1P04049 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
RAF1P04049 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.26■□□□□ 0.83
RAF1P04049 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
RAF1P04049 GAK-223ENST00000628912 497 ntTSL 5 BASIC20.26■□□□□ 0.83
RAF1P04049 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.26■□□□□ 0.83
RAF1P04049 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.26■□□□□ 0.83
RAF1P04049 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
RAF1P04049 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAF1P04049 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAF1P04049 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAF1P04049 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAF1P04049 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.25■□□□□ 0.83
RAF1P04049 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.25■□□□□ 0.83
RAF1P04049 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RAF1P04049 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.24■□□□□ 0.83
RAF1P04049 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
RAF1P04049 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.24■□□□□ 0.83
RAF1P04049 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.24■□□□□ 0.83
RAF1P04049 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RAF1P04049 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
RAF1P04049 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
RAF1P04049 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
RAF1P04049 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
RAF1P04049 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RAF1P04049 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
RAF1P04049 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RAF1P04049 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RAF1P04049 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
RAF1P04049 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.23■□□□□ 0.83
RAF1P04049 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
RAF1P04049 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
RAF1P04049 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
RAF1P04049 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
RAF1P04049 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.22■□□□□ 0.83
RAF1P04049 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
RAF1P04049 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RAF1P04049 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RAF1P04049 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RAF1P04049 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.22■□□□□ 0.83
RAF1P04049 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.22■□□□□ 0.83
RAF1P04049 FOXO3B-201ENST00000395675 1928 ntBASIC20.21■□□□□ 0.83
RAF1P04049 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RAF1P04049 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RAF1P04049 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
RAF1P04049 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.21■□□□□ 0.83
RAF1P04049 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.21■□□□□ 0.83
RAF1P04049 AL512631.2-201ENST00000604634 923 ntBASIC20.21■□□□□ 0.83
RAF1P04049 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.21■□□□□ 0.83
RAF1P04049 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RAF1P04049 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
RAF1P04049 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.21■□□□□ 0.83
RAF1P04049 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RAF1P04049 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RAF1P04049 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RAF1P04049 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RAF1P04049 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
RAF1P04049 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
RAF1P04049 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RAF1P04049 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RAF1P04049 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.2■□□□□ 0.82
RAF1P04049 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RAF1P04049 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.2■□□□□ 0.82
RAF1P04049 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RAF1P04049 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RAF1P04049 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RAF1P04049 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.2■□□□□ 0.82
RAF1P04049 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
RAF1P04049 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
RAF1P04049 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
RAF1P04049 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RAF1P04049 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RAF1P04049 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RAF1P04049 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RAF1P04049 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RAF1P04049 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RAF1P04049 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RAF1P04049 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RAF1P04049 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.19■□□□□ 0.82
RAF1P04049 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.19■□□□□ 0.82
RAF1P04049 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.19■□□□□ 0.82
RAF1P04049 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.19■□□□□ 0.82
RAF1P04049 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
RAF1P04049 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.19■□□□□ 0.82
RAF1P04049 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RAF1P04049 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
RAF1P04049 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.18■□□□□ 0.82
RAF1P04049 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
RAF1P04049 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RAF1P04049 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RAF1P04049 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RAF1P04049 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.18■□□□□ 0.82
RAF1P04049 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.18■□□□□ 0.82
RAF1P04049 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
RAF1P04049 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
RAF1P04049 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.18■□□□□ 0.82
RAF1P04049 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RAF1P04049 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RAF1P04049 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms