Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LDLRP01130 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.58■■□□□ 1.05
LDLRP01130 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.58■■□□□ 1.05
LDLRP01130 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.58■■□□□ 1.05
LDLRP01130 AC131281.2-201ENST00000520478 145 ntBASIC21.58■■□□□ 1.05
LDLRP01130 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
LDLRP01130 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
LDLRP01130 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
LDLRP01130 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
LDLRP01130 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.58■■□□□ 1.04
LDLRP01130 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
LDLRP01130 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
LDLRP01130 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
LDLRP01130 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.57■■□□□ 1.04
LDLRP01130 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
LDLRP01130 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
LDLRP01130 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
LDLRP01130 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LDLRP01130 TSPY9P-201ENST00000440215 945 ntBASIC21.57■■□□□ 1.04
LDLRP01130 TSPY11P-201ENST00000442607 1045 ntBASIC21.57■■□□□ 1.04
LDLRP01130 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.57■■□□□ 1.04
LDLRP01130 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.57■■□□□ 1.04
LDLRP01130 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LDLRP01130 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
LDLRP01130 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LDLRP01130 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LDLRP01130 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LDLRP01130 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
LDLRP01130 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC21.56■■□□□ 1.04
LDLRP01130 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
LDLRP01130 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.56■■□□□ 1.04
LDLRP01130 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LDLRP01130 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.56■■□□□ 1.04
LDLRP01130 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LDLRP01130 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LDLRP01130 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LDLRP01130 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.55■■□□□ 1.04
LDLRP01130 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.55■■□□□ 1.04
LDLRP01130 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
LDLRP01130 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.55■■□□□ 1.04
LDLRP01130 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LDLRP01130 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LDLRP01130 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LDLRP01130 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
LDLRP01130 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.54■■□□□ 1.04
LDLRP01130 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
LDLRP01130 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LDLRP01130 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
LDLRP01130 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LDLRP01130 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LDLRP01130 KRT18P24-201ENST00000344739 1156 ntBASIC21.54■■□□□ 1.04
LDLRP01130 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.54■■□□□ 1.04
LDLRP01130 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.54■■□□□ 1.04
LDLRP01130 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LDLRP01130 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LDLRP01130 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LDLRP01130 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LDLRP01130 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LDLRP01130 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LDLRP01130 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
LDLRP01130 AC137630.3-201ENST00000607245 391 ntBASIC21.53■■□□□ 1.04
LDLRP01130 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.53■■□□□ 1.04
LDLRP01130 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LDLRP01130 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
LDLRP01130 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LDLRP01130 ANOS2P-203ENST00000472227 1816 ntBASIC21.52■■□□□ 1.04
LDLRP01130 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LDLRP01130 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LDLRP01130 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LDLRP01130 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
LDLRP01130 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
LDLRP01130 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
LDLRP01130 AL136116.3-201ENST00000402907 1138 ntBASIC21.52■■□□□ 1.04
LDLRP01130 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.52■■□□□ 1.04
LDLRP01130 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
LDLRP01130 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
LDLRP01130 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LDLRP01130 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
LDLRP01130 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
LDLRP01130 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.52■■□□□ 1.03
LDLRP01130 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LDLRP01130 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LDLRP01130 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.51■■□□□ 1.03
LDLRP01130 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
LDLRP01130 AC110285.6-201ENST00000617652 491 ntBASIC21.51■■□□□ 1.03
LDLRP01130 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.51■■□□□ 1.03
LDLRP01130 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LDLRP01130 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.51■■□□□ 1.03
LDLRP01130 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.51■■□□□ 1.03
LDLRP01130 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
LDLRP01130 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LDLRP01130 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
LDLRP01130 AC021242.3-201ENST00000607598 1377 ntBASIC21.5■■□□□ 1.03
LDLRP01130 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LDLRP01130 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
LDLRP01130 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.5■■□□□ 1.03
LDLRP01130 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.5■■□□□ 1.03
LDLRP01130 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.5■■□□□ 1.03
LDLRP01130 AC005837.3-201ENST00000612163 286 ntBASIC21.5■■□□□ 1.03
LDLRP01130 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms