Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
PTCD1O75127 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC29.11■■■□□ 2.25
PTCD1O75127 KRT18P5-201ENST00000436075 1291 ntBASIC29.11■■■□□ 2.25
PTCD1O75127 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
PTCD1O75127 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC29.11■■■□□ 2.25
PTCD1O75127 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC29.11■■■□□ 2.25
PTCD1O75127 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC29.11■■■□□ 2.25
PTCD1O75127 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC29.11■■■□□ 2.25
PTCD1O75127 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC29.11■■■□□ 2.25
PTCD1O75127 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
PTCD1O75127 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC29.1■■■□□ 2.25
PTCD1O75127 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC29.1■■■□□ 2.25
PTCD1O75127 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC29.1■■■□□ 2.25
PTCD1O75127 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC29.1■■■□□ 2.25
PTCD1O75127 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
PTCD1O75127 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC29.1■■■□□ 2.25
PTCD1O75127 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
PTCD1O75127 AC022211.4-201ENST00000625094 2161 ntBASIC29.09■■■□□ 2.25
PTCD1O75127 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC29.09■■■□□ 2.25
PTCD1O75127 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
PTCD1O75127 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
PTCD1O75127 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC29.09■■■□□ 2.25
PTCD1O75127 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC29.09■■■□□ 2.25
PTCD1O75127 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC29.09■■■□□ 2.25
PTCD1O75127 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
PTCD1O75127 DUX4L2-201ENST00000561772 1275 ntBASIC29.09■■■□□ 2.25
PTCD1O75127 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC29.09■■■□□ 2.25
PTCD1O75127 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC29.09■■■□□ 2.25
PTCD1O75127 MIR6084-201ENST00000622012 110 ntBASIC29.09■■■□□ 2.25
PTCD1O75127 DUX4L6-201ENST00000626483 1275 ntBASIC29.09■■■□□ 2.25
PTCD1O75127 DUX4L1-201ENST00000627662 1275 ntBASIC29.09■■■□□ 2.25
PTCD1O75127 DUX4L8-201ENST00000629013 1275 ntBASIC29.09■■■□□ 2.25
PTCD1O75127 DUX4L3-201ENST00000630187 1275 ntBASIC29.09■■■□□ 2.25
PTCD1O75127 DUX4L7-201ENST00000630678 1275 ntBASIC29.09■■■□□ 2.25
PTCD1O75127 DUX4L5-201ENST00000630834 1275 ntBASIC29.09■■■□□ 2.25
PTCD1O75127 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC29.09■■■□□ 2.25
PTCD1O75127 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC29.09■■■□□ 2.25
PTCD1O75127 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
PTCD1O75127 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC29.09■■■□□ 2.25
PTCD1O75127 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
PTCD1O75127 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
PTCD1O75127 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
PTCD1O75127 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
PTCD1O75127 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
PTCD1O75127 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC29.08■■■□□ 2.25
PTCD1O75127 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC29.08■■■□□ 2.25
PTCD1O75127 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC29.08■■■□□ 2.25
PTCD1O75127 SHF-207ENST00000560540 2062 ntTSL 5 BASIC29.08■■■□□ 2.25
PTCD1O75127 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
PTCD1O75127 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC29.07■■■□□ 2.24
PTCD1O75127 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
PTCD1O75127 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC29.07■■■□□ 2.24
PTCD1O75127 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC29.07■■■□□ 2.24
PTCD1O75127 AC090192.1-201ENST00000517740 490 ntBASIC29.07■■■□□ 2.24
PTCD1O75127 AICDA-202ENST00000537228 667 ntTSL 5 BASIC29.07■■■□□ 2.24
PTCD1O75127 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC29.07■■■□□ 2.24
PTCD1O75127 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC29.07■■■□□ 2.24
PTCD1O75127 RAB43-208ENST00000615093 783 ntTSL 5 BASIC29.07■■■□□ 2.24
PTCD1O75127 RARRES2P11-201ENST00000635158 484 ntBASIC29.07■■■□□ 2.24
PTCD1O75127 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
PTCD1O75127 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC29.06■■■□□ 2.24
PTCD1O75127 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
PTCD1O75127 AC133637.1-201ENST00000624115 1537 ntBASIC29.06■■■□□ 2.24
PTCD1O75127 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC29.06■■■□□ 2.24
PTCD1O75127 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC29.06■■■□□ 2.24
PTCD1O75127 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
PTCD1O75127 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
PTCD1O75127 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC29.05■■■□□ 2.24
PTCD1O75127 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
PTCD1O75127 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
PTCD1O75127 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC29.05■■■□□ 2.24
PTCD1O75127 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
PTCD1O75127 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC29.05■■■□□ 2.24
PTCD1O75127 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
PTCD1O75127 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC29.05■■■□□ 2.24
PTCD1O75127 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
PTCD1O75127 IGHV3-19-201ENST00000521488 291 ntBASIC29.05■■■□□ 2.24
PTCD1O75127 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
PTCD1O75127 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
PTCD1O75127 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC29.05■■■□□ 2.24
PTCD1O75127 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC29.05■■■□□ 2.24
PTCD1O75127 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC29.04■■■□□ 2.24
PTCD1O75127 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC29.04■■■□□ 2.24
PTCD1O75127 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
PTCD1O75127 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC29.04■■■□□ 2.24
PTCD1O75127 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC29.04■■■□□ 2.24
PTCD1O75127 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
PTCD1O75127 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC29.03■■■□□ 2.24
PTCD1O75127 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC29.03■■■□□ 2.24
PTCD1O75127 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC29.03■■■□□ 2.24
PTCD1O75127 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC29.03■■■□□ 2.24
PTCD1O75127 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC29.03■■■□□ 2.24
PTCD1O75127 AL358852.1-201ENST00000623174 1268 ntBASIC29.03■■■□□ 2.24
PTCD1O75127 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
PTCD1O75127 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
PTCD1O75127 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC29.02■■■□□ 2.24
PTCD1O75127 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
PTCD1O75127 MIR572-201ENST00000384983 95 ntBASIC29.02■■■□□ 2.24
PTCD1O75127 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC29.02■■■□□ 2.24
PTCD1O75127 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC29.02■■■□□ 2.24
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms