Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC22.13■■□□□ 1.13
TRIM13O60858 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
TRIM13O60858 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC22.13■■□□□ 1.13
TRIM13O60858 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC22.12■■□□□ 1.13
TRIM13O60858 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TRIM13O60858 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
TRIM13O60858 MTX2-204ENST00000443241 799 ntTSL 3 BASIC22.12■■□□□ 1.13
TRIM13O60858 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TRIM13O60858 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC22.12■■□□□ 1.13
TRIM13O60858 AC079630.1-202ENST00000618127 1840 ntBASIC22.12■■□□□ 1.13
TRIM13O60858 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
TRIM13O60858 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
TRIM13O60858 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC22.11■■□□□ 1.13
TRIM13O60858 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TRIM13O60858 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC22.11■■□□□ 1.13
TRIM13O60858 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
TRIM13O60858 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
TRIM13O60858 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC22.11■■□□□ 1.13
TRIM13O60858 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
TRIM13O60858 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
TRIM13O60858 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC22.1■■□□□ 1.13
TRIM13O60858 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
TRIM13O60858 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
TRIM13O60858 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
TRIM13O60858 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
TRIM13O60858 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
TRIM13O60858 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
TRIM13O60858 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC22.1■■□□□ 1.13
TRIM13O60858 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
TRIM13O60858 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TRIM13O60858 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
TRIM13O60858 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TRIM13O60858 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TRIM13O60858 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TRIM13O60858 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TRIM13O60858 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC22.09■■□□□ 1.13
TRIM13O60858 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC22.09■■□□□ 1.13
TRIM13O60858 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TRIM13O60858 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC22.09■■□□□ 1.13
TRIM13O60858 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC22.08■■□□□ 1.13
TRIM13O60858 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC22.08■■□□□ 1.13
TRIM13O60858 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
TRIM13O60858 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
TRIM13O60858 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
TRIM13O60858 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC22.08■■□□□ 1.13
TRIM13O60858 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
TRIM13O60858 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC22.08■■□□□ 1.13
TRIM13O60858 AC139795.1-202ENST00000500444 432 ntBASIC22.08■■□□□ 1.13
TRIM13O60858 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
TRIM13O60858 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
TRIM13O60858 AC242852.2-201ENST00000615738 1807 ntBASIC22.08■■□□□ 1.12
TRIM13O60858 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
TRIM13O60858 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
TRIM13O60858 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TRIM13O60858 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
TRIM13O60858 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC22.07■■□□□ 1.12
TRIM13O60858 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC22.07■■□□□ 1.12
TRIM13O60858 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC22.07■■□□□ 1.12
TRIM13O60858 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC22.07■■□□□ 1.12
TRIM13O60858 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TRIM13O60858 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TRIM13O60858 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TRIM13O60858 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TRIM13O60858 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TRIM13O60858 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRIM13O60858 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TRIM13O60858 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC22.06■■□□□ 1.12
TRIM13O60858 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC22.06■■□□□ 1.12
TRIM13O60858 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC22.06■■□□□ 1.12
TRIM13O60858 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRIM13O60858 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
TRIM13O60858 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRIM13O60858 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
TRIM13O60858 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TRIM13O60858 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC22.05■■□□□ 1.12
TRIM13O60858 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
TRIM13O60858 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TRIM13O60858 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
TRIM13O60858 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
TRIM13O60858 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC22.05■■□□□ 1.12
TRIM13O60858 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC22.05■■□□□ 1.12
TRIM13O60858 AC120024.1-201ENST00000562672 995 ntBASIC22.05■■□□□ 1.12
TRIM13O60858 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
TRIM13O60858 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TRIM13O60858 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRIM13O60858 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRIM13O60858 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC22.04■■□□□ 1.12
TRIM13O60858 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC22.04■■□□□ 1.12
TRIM13O60858 AF131216.4-201ENST00000638924 1588 ntBASIC22.04■■□□□ 1.12
TRIM13O60858 AC137767.1-201ENST00000602918 1920 ntBASIC22.04■■□□□ 1.12
TRIM13O60858 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC22.04■■□□□ 1.12
TRIM13O60858 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC22.04■■□□□ 1.12
TRIM13O60858 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC22.04■■□□□ 1.12
TRIM13O60858 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRIM13O60858 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC22.04■■□□□ 1.12
TRIM13O60858 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
TRIM13O60858 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
TRIM13O60858 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
TRIM13O60858 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC22.04■■□□□ 1.12
TRIM13O60858 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC22.04■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms