Protein–RNA interactions for Protein: O60287

URB1, Nucleolar pre-ribosomal-associated protein 1, humanhuman

Known RBP Predictions only

Length 2,271 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
URB1O60287 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
URB1O60287 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.29■■□□□ 1
URB1O60287 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
URB1O60287 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.29■■□□□ 1
URB1O60287 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.29■■□□□ 1
URB1O60287 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.29■■□□□ 1
URB1O60287 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.29■■□□□ 1
URB1O60287 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.29■■□□□ 1
URB1O60287 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.29■■□□□ 1
URB1O60287 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.29■■□□□ 1
URB1O60287 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.29■■□□□ 1
URB1O60287 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.29■■□□□ 1
URB1O60287 AC073111.5-205ENST00000641717 521 ntBASIC21.29■■□□□ 1
URB1O60287 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
URB1O60287 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.28■■□□□ 1
URB1O60287 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.28■■□□□ 1
URB1O60287 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.28■■□□□ 1
URB1O60287 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
URB1O60287 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.27■■□□□ 1
URB1O60287 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
URB1O60287 TSPY20P-201ENST00000450910 630 ntBASIC21.27■■□□□ 1
URB1O60287 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.27■■□□□ 1
URB1O60287 pRNA.6-201ENST00000610482 90 ntBASIC21.27■■□□□ 1
URB1O60287 pRNA.5-201ENST00000612139 90 ntBASIC21.27■■□□□ 1
URB1O60287 pRNA.11-201ENST00000618423 90 ntBASIC21.27■■□□□ 1
URB1O60287 pRNA.13-201ENST00000619112 90 ntBASIC21.27■■□□□ 1
URB1O60287 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC21.27■■□□□ 1
URB1O60287 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.27■■□□□ 1
URB1O60287 AC091060.1-201ENST00000623524 1766 ntBASIC21.27■■□□□ 1
URB1O60287 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.27■■□□□ 1
URB1O60287 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.27■■□□□ 1
URB1O60287 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
URB1O60287 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
URB1O60287 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
URB1O60287 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
URB1O60287 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.26■□□□□ 0.99
URB1O60287 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.26■□□□□ 0.99
URB1O60287 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
URB1O60287 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
URB1O60287 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
URB1O60287 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
URB1O60287 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
URB1O60287 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
URB1O60287 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
URB1O60287 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
URB1O60287 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
URB1O60287 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.25■□□□□ 0.99
URB1O60287 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.25■□□□□ 0.99
URB1O60287 AL109923.1-201ENST00000618799 583 ntBASIC21.25■□□□□ 0.99
URB1O60287 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
URB1O60287 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
URB1O60287 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
URB1O60287 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
URB1O60287 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.25■□□□□ 0.99
URB1O60287 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.25■□□□□ 0.99
URB1O60287 CROCCP5-201ENST00000436658 830 ntBASIC21.24■□□□□ 0.99
URB1O60287 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.24■□□□□ 0.99
URB1O60287 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
URB1O60287 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
URB1O60287 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
URB1O60287 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
URB1O60287 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.24■□□□□ 0.99
URB1O60287 KRT18P61-201ENST00000585825 1298 ntBASIC21.24■□□□□ 0.99
URB1O60287 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
URB1O60287 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
URB1O60287 AC142086.6-201ENST00000621154 1765 ntBASIC21.23■□□□□ 0.99
URB1O60287 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
URB1O60287 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
URB1O60287 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
URB1O60287 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.23■□□□□ 0.99
URB1O60287 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
URB1O60287 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.23■□□□□ 0.99
URB1O60287 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
URB1O60287 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.23■□□□□ 0.99
URB1O60287 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
URB1O60287 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.23■□□□□ 0.99
URB1O60287 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
URB1O60287 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
URB1O60287 NCF1B-203ENST00000435988 1254 ntBASIC21.22■□□□□ 0.99
URB1O60287 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.22■□□□□ 0.99
URB1O60287 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
URB1O60287 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
URB1O60287 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.22■□□□□ 0.99
URB1O60287 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
URB1O60287 AC006970.2-201ENST00000450065 779 ntBASIC21.22■□□□□ 0.99
URB1O60287 CD99P1-205ENST00000527459 561 ntBASIC21.22■□□□□ 0.99
URB1O60287 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
URB1O60287 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
URB1O60287 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.21■□□□□ 0.99
URB1O60287 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
URB1O60287 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.21■□□□□ 0.99
URB1O60287 AC142086.2-201ENST00000569753 217 ntBASIC21.21■□□□□ 0.99
URB1O60287 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
URB1O60287 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
URB1O60287 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
URB1O60287 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
URB1O60287 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.21■□□□□ 0.99
URB1O60287 AC093827.2-201ENST00000512654 315 ntBASIC21.21■□□□□ 0.99
URB1O60287 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
URB1O60287 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms