Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
MSH4O15457 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC25.4■■□□□ 1.66
MSH4O15457 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.66
MSH4O15457 H19-210ENST00000439725 1929 ntTSL 2 BASIC25.39■■□□□ 1.66
MSH4O15457 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
MSH4O15457 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
MSH4O15457 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
MSH4O15457 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
MSH4O15457 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
MSH4O15457 AC006455.2-201ENST00000429931 906 ntBASIC25.39■■□□□ 1.66
MSH4O15457 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
MSH4O15457 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
MSH4O15457 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
MSH4O15457 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
MSH4O15457 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
MSH4O15457 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC25.38■■□□□ 1.65
MSH4O15457 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
MSH4O15457 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
MSH4O15457 AC241377.3-202ENST00000626088 1088 ntBASIC25.38■■□□□ 1.65
MSH4O15457 AC241585.3-202ENST00000628937 1088 ntBASIC25.38■■□□□ 1.65
MSH4O15457 AC245100.8-202ENST00000629247 1058 ntBASIC25.38■■□□□ 1.65
MSH4O15457 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC25.38■■□□□ 1.65
MSH4O15457 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH4O15457 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC25.37■■□□□ 1.65
MSH4O15457 UNC93B3-201ENST00000308076 687 ntBASIC25.37■■□□□ 1.65
MSH4O15457 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
MSH4O15457 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC25.37■■□□□ 1.65
MSH4O15457 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
MSH4O15457 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
MSH4O15457 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC25.36■■□□□ 1.65
MSH4O15457 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
MSH4O15457 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC25.36■■□□□ 1.65
MSH4O15457 AL139246.5-201ENST00000606645 996 ntBASIC25.36■■□□□ 1.65
MSH4O15457 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC25.36■■□□□ 1.65
MSH4O15457 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
MSH4O15457 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
MSH4O15457 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
MSH4O15457 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH4O15457 AC144652.1-201ENST00000609974 1624 ntBASIC25.35■■□□□ 1.65
MSH4O15457 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
MSH4O15457 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH4O15457 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
MSH4O15457 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH4O15457 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
MSH4O15457 AC079630.1-202ENST00000618127 1840 ntBASIC25.35■■□□□ 1.65
MSH4O15457 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
MSH4O15457 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
MSH4O15457 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
MSH4O15457 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
MSH4O15457 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
MSH4O15457 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC25.34■■□□□ 1.65
MSH4O15457 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
MSH4O15457 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
MSH4O15457 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
MSH4O15457 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
MSH4O15457 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
MSH4O15457 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC25.33■■□□□ 1.65
MSH4O15457 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC25.33■■□□□ 1.65
MSH4O15457 SERBP1P1-201ENST00000396021 1160 ntBASIC25.33■■□□□ 1.65
MSH4O15457 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
MSH4O15457 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
MSH4O15457 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC25.33■■□□□ 1.65
MSH4O15457 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
MSH4O15457 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC25.33■■□□□ 1.65
MSH4O15457 AC092171.4-201ENST00000609130 632 ntBASIC25.33■■□□□ 1.65
MSH4O15457 AC009086.3-201ENST00000623486 1008 ntBASIC25.33■■□□□ 1.65
MSH4O15457 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
MSH4O15457 SYT6-210ENST00000641643 1587 ntBASIC25.32■■□□□ 1.64
MSH4O15457 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
MSH4O15457 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
MSH4O15457 DUX4L19-201ENST00000557448 1267 ntBASIC25.32■■□□□ 1.64
MSH4O15457 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
MSH4O15457 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
MSH4O15457 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC25.32■■□□□ 1.64
MSH4O15457 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC25.32■■□□□ 1.64
MSH4O15457 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.32■■□□□ 1.64
MSH4O15457 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
MSH4O15457 GTSE1-AS1-202ENST00000623117 1518 ntBASIC25.32■■□□□ 1.64
MSH4O15457 FP325331.1-202ENST00000623531 1380 ntBASIC25.31■■□□□ 1.64
MSH4O15457 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC25.31■■□□□ 1.64
MSH4O15457 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC25.31■■□□□ 1.64
MSH4O15457 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
MSH4O15457 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
MSH4O15457 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC25.31■■□□□ 1.64
MSH4O15457 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
MSH4O15457 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC25.31■■□□□ 1.64
MSH4O15457 AL136162.1-201ENST00000607711 1078 ntBASIC25.31■■□□□ 1.64
MSH4O15457 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
MSH4O15457 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
MSH4O15457 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
MSH4O15457 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
MSH4O15457 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
MSH4O15457 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC25.3■■□□□ 1.64
MSH4O15457 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC25.3■■□□□ 1.64
MSH4O15457 PTCHD3P2-201ENST00000424937 1205 ntBASIC25.3■■□□□ 1.64
MSH4O15457 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC25.3■■□□□ 1.64
MSH4O15457 SF1-220ENST00000626028 704 ntTSL 2 BASIC25.3■■□□□ 1.64
MSH4O15457 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
MSH4O15457 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
MSH4O15457 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC25.3■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms