Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRIM49D1C9J1S8 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC22.53■■□□□ 1.2
TRIM49D1C9J1S8 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TRIM49D1C9J1S8 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC22.53■■□□□ 1.2
TRIM49D1C9J1S8 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRIM49D1C9J1S8 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
TRIM49D1C9J1S8 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRIM49D1C9J1S8 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRIM49D1C9J1S8 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
TRIM49D1C9J1S8 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC22.53■■□□□ 1.2
TRIM49D1C9J1S8 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRIM49D1C9J1S8 AC079630.1-202ENST00000618127 1840 ntBASIC22.52■■□□□ 1.2
TRIM49D1C9J1S8 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRIM49D1C9J1S8 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
TRIM49D1C9J1S8 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC22.52■■□□□ 1.2
TRIM49D1C9J1S8 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
TRIM49D1C9J1S8 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
TRIM49D1C9J1S8 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRIM49D1C9J1S8 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC22.51■■□□□ 1.19
TRIM49D1C9J1S8 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
TRIM49D1C9J1S8 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRIM49D1C9J1S8 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRIM49D1C9J1S8 LBH-205ENST00000407930 756 ntTSL 2 BASIC22.51■■□□□ 1.19
TRIM49D1C9J1S8 AC022616.5-201ENST00000518796 181 ntBASIC22.51■■□□□ 1.19
TRIM49D1C9J1S8 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
TRIM49D1C9J1S8 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRIM49D1C9J1S8 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC22.51■■□□□ 1.19
TRIM49D1C9J1S8 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TRIM49D1C9J1S8 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC22.5■■□□□ 1.19
TRIM49D1C9J1S8 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
TRIM49D1C9J1S8 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TRIM49D1C9J1S8 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
TRIM49D1C9J1S8 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TRIM49D1C9J1S8 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC22.5■■□□□ 1.19
TRIM49D1C9J1S8 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
TRIM49D1C9J1S8 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC22.5■■□□□ 1.19
TRIM49D1C9J1S8 AC019171.1-201ENST00000601251 1056 ntBASIC22.5■■□□□ 1.19
TRIM49D1C9J1S8 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
TRIM49D1C9J1S8 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
TRIM49D1C9J1S8 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
TRIM49D1C9J1S8 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC22.5■■□□□ 1.19
TRIM49D1C9J1S8 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TRIM49D1C9J1S8 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TRIM49D1C9J1S8 AC127496.7-201ENST00000625110 1798 ntBASIC22.49■■□□□ 1.19
TRIM49D1C9J1S8 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
TRIM49D1C9J1S8 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC22.49■■□□□ 1.19
TRIM49D1C9J1S8 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TRIM49D1C9J1S8 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
TRIM49D1C9J1S8 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC22.48■■□□□ 1.19
TRIM49D1C9J1S8 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
TRIM49D1C9J1S8 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
TRIM49D1C9J1S8 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TRIM49D1C9J1S8 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC22.48■■□□□ 1.19
TRIM49D1C9J1S8 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC22.48■■□□□ 1.19
TRIM49D1C9J1S8 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TRIM49D1C9J1S8 AC139795.1-202ENST00000500444 432 ntBASIC22.48■■□□□ 1.19
TRIM49D1C9J1S8 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC22.48■■□□□ 1.19
TRIM49D1C9J1S8 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TRIM49D1C9J1S8 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC22.47■■□□□ 1.19
TRIM49D1C9J1S8 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TRIM49D1C9J1S8 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TRIM49D1C9J1S8 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC22.47■■□□□ 1.19
TRIM49D1C9J1S8 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
TRIM49D1C9J1S8 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TRIM49D1C9J1S8 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
TRIM49D1C9J1S8 MTX2-204ENST00000443241 799 ntTSL 3 BASIC22.46■■□□□ 1.19
TRIM49D1C9J1S8 DUX4L18-201ENST00000553347 1267 ntBASIC22.46■■□□□ 1.19
TRIM49D1C9J1S8 AC120024.1-201ENST00000562672 995 ntBASIC22.46■■□□□ 1.19
TRIM49D1C9J1S8 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TRIM49D1C9J1S8 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC22.46■■□□□ 1.19
TRIM49D1C9J1S8 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC22.46■■□□□ 1.19
TRIM49D1C9J1S8 ESRRAP2-201ENST00000418437 1549 ntBASIC22.46■■□□□ 1.19
TRIM49D1C9J1S8 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC22.46■■□□□ 1.19
TRIM49D1C9J1S8 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TRIM49D1C9J1S8 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC22.46■■□□□ 1.19
TRIM49D1C9J1S8 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
TRIM49D1C9J1S8 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
TRIM49D1C9J1S8 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
TRIM49D1C9J1S8 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TRIM49D1C9J1S8 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TRIM49D1C9J1S8 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
TRIM49D1C9J1S8 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
TRIM49D1C9J1S8 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC22.45■■□□□ 1.18
TRIM49D1C9J1S8 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC22.45■■□□□ 1.18
TRIM49D1C9J1S8 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
TRIM49D1C9J1S8 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TRIM49D1C9J1S8 HSD17B1P1-201ENST00000590052 955 ntBASIC22.45■■□□□ 1.18
TRIM49D1C9J1S8 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
TRIM49D1C9J1S8 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
TRIM49D1C9J1S8 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC22.45■■□□□ 1.18
TRIM49D1C9J1S8 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
TRIM49D1C9J1S8 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
TRIM49D1C9J1S8 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
TRIM49D1C9J1S8 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TRIM49D1C9J1S8 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
TRIM49D1C9J1S8 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
TRIM49D1C9J1S8 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
TRIM49D1C9J1S8 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
TRIM49D1C9J1S8 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC22.44■■□□□ 1.18
TRIM49D1C9J1S8 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms