Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 MKRN5P-201ENST00000445263 1467 ntBASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
TRIM55Q9BYV6 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 AGAP12P-201ENST00000585227 2359 ntBASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 BTRC-202ENST00000370187 6134 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 KY-202ENST00000503669 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 AHRR-211ENST00000515206 462 ntTSL 5 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 AC078819.1-201ENST00000547454 765 ntBASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 AC012085.1-201ENST00000548270 765 ntBASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 AC009474.1-201ENST00000455096 1565 ntBASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 AC118758.2-201ENST00000614242 2813 ntBASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.41□□□□□ -0.1
TRIM55Q9BYV6 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 AC136604.1-202ENST00000425471 771 ntBASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms