Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MAFTRR-201ENST00000562921 1859 ntTSL 5 BASIC16.42■□□□□ 0.22
BRCA1P38398 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
BRCA1P38398 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC16.42■□□□□ 0.22
BRCA1P38398 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
BRCA1P38398 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BRCA1P38398 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.42■□□□□ 0.22
BRCA1P38398 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
BRCA1P38398 LINC02154-201ENST00000412485 1497 ntTSL 2 BASIC16.42■□□□□ 0.22
BRCA1P38398 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BRCA1P38398 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
BRCA1P38398 LIMS1-204ENST00000409441 1627 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BRCA1P38398 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BRCA1P38398 ENSA-208ENST00000369014 2085 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
BRCA1P38398 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC16.42■□□□□ 0.22
BRCA1P38398 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
BRCA1P38398 OAZ3-201ENST00000321531 851 ntTSL 5 BASIC16.42■□□□□ 0.22
BRCA1P38398 KRTAP4-6-201ENST00000345847 1055 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
BRCA1P38398 AL356583.3-201ENST00000412354 417 ntBASIC16.42■□□□□ 0.22
BRCA1P38398 AL049792.1-201ENST00000424708 1262 ntBASIC16.42■□□□□ 0.22
BRCA1P38398 SEMA6A-AS1-206ENST00000514214 782 ntTSL 3 BASIC16.42■□□□□ 0.22
BRCA1P38398 SLC25A3-212ENST00000549338 1285 ntAPPRIS ALT1 TSL 3 BASIC16.42■□□□□ 0.22
BRCA1P38398 MT1L-201ENST00000565768 411 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
BRCA1P38398 AC006511.4-201ENST00000631571 561 ntTSL 3 BASIC16.42■□□□□ 0.22
BRCA1P38398 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BRCA1P38398 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BRCA1P38398 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BRCA1P38398 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BRCA1P38398 CREBRF-203ENST00000520420 1660 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BRCA1P38398 AC023824.1-201ENST00000562945 2975 ntBASIC16.41■□□□□ 0.22
BRCA1P38398 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BRCA1P38398 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BRCA1P38398 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
BRCA1P38398 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.41■□□□□ 0.22
BRCA1P38398 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC16.41■□□□□ 0.22
BRCA1P38398 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BRCA1P38398 PSAT1-201ENST00000347159 1411 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BRCA1P38398 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.41■□□□□ 0.22
BRCA1P38398 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
BRCA1P38398 AL162595.1-201ENST00000429227 868 ntTSL 5 BASIC16.41■□□□□ 0.22
BRCA1P38398 AC069277.1-201ENST00000433639 1083 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BRCA1P38398 DMKN-244ENST00000480502 820 ntAPPRIS ALT2 TSL 3 BASIC16.41■□□□□ 0.22
BRCA1P38398 AL589666.1-201ENST00000503906 835 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
BRCA1P38398 AC010395.2-201ENST00000509899 904 ntBASIC16.41■□□□□ 0.22
BRCA1P38398 RPS23-205ENST00000510019 1019 ntTSL 4 BASIC16.41■□□□□ 0.22
BRCA1P38398 AC063924.1-201ENST00000546680 673 ntBASIC16.41■□□□□ 0.22
BRCA1P38398 AL133453.1-201ENST00000554055 581 ntTSL 3 BASIC16.41■□□□□ 0.22
BRCA1P38398 AC009132.1-201ENST00000565194 320 ntBASIC16.41■□□□□ 0.22
BRCA1P38398 MIR1587-201ENST00000583319 53 ntBASIC16.41■□□□□ 0.22
BRCA1P38398 AP005264.6-203ENST00000586882 1050 ntTSL 5 BASIC16.41■□□□□ 0.22
BRCA1P38398 ZNF268-219ENST00000611984 583 ntTSL 5 BASIC16.41■□□□□ 0.22
BRCA1P38398 LINC00694-204ENST00000637612 1059 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
BRCA1P38398 CCDC175-201ENST00000281581 2487 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
BRCA1P38398 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BRCA1P38398 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
BRCA1P38398 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BRCA1P38398 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BRCA1P38398 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
BRCA1P38398 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
BRCA1P38398 ANXA13-201ENST00000262219 1588 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BRCA1P38398 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
BRCA1P38398 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRCA1P38398 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRCA1P38398 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRCA1P38398 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BRCA1P38398 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
BRCA1P38398 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
BRCA1P38398 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRCA1P38398 IGFL4-201ENST00000377697 573 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRCA1P38398 MRPS16P3-201ENST00000415961 374 ntBASIC16.4■□□□□ 0.22
BRCA1P38398 CDCA4P3-201ENST00000442572 689 ntBASIC16.4■□□□□ 0.22
BRCA1P38398 COL18A1-AS2-201ENST00000446475 552 ntTSL 4 BASIC16.4■□□□□ 0.22
BRCA1P38398 GOSR1-205ENST00000467337 1011 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BRCA1P38398 SCOC-209ENST00000512749 841 ntAPPRIS ALT1 TSL 3 BASIC16.4■□□□□ 0.22
BRCA1P38398 AC092656.1-202ENST00000515843 998 ntTSL 4 BASIC16.4■□□□□ 0.22
BRCA1P38398 AC104117.1-201ENST00000517817 900 ntBASIC16.4■□□□□ 0.22
BRCA1P38398 IGHV1OR16-3-201ENST00000568138 205 ntBASIC16.4■□□□□ 0.22
BRCA1P38398 CALM3-206ENST00000594523 540 ntTSL 4 BASIC16.4■□□□□ 0.22
BRCA1P38398 AC018695.2-201ENST00000602789 498 ntTSL 5 BASIC16.4■□□□□ 0.22
BRCA1P38398 AC007274.3-201ENST00000619838 385 ntBASIC16.4■□□□□ 0.22
BRCA1P38398 LINC00963-217ENST00000624009 663 ntTSL 5 BASIC16.4■□□□□ 0.22
BRCA1P38398 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
BRCA1P38398 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.4■□□□□ 0.22
BRCA1P38398 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRCA1P38398 DNPEP-205ENST00000373972 1578 ntTSL 2 BASIC16.4■□□□□ 0.22
BRCA1P38398 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRCA1P38398 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BRCA1P38398 AC069061.4-201ENST00000581294 1347 ntBASIC16.4■□□□□ 0.22
BRCA1P38398 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
BRCA1P38398 MRPL55-213ENST00000366740 644 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.22
BRCA1P38398 NDUFS5-201ENST00000372967 544 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
BRCA1P38398 NDUFS5-202ENST00000372969 548 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
BRCA1P38398 NAA10-205ENST00000393712 908 ntTSL 5 BASIC16.39■□□□□ 0.22
BRCA1P38398 CFL1P1-204ENST00000456375 424 ntTSL 3 BASIC16.39■□□□□ 0.22
BRCA1P38398 AADAC-202ENST00000488869 719 ntTSL 2 BASIC16.39■□□□□ 0.22
BRCA1P38398 SSSCA1-203ENST00000526877 713 ntTSL 3 BASIC16.39■□□□□ 0.22
BRCA1P38398 PEBP1P1-201ENST00000554856 510 ntBASIC16.39■□□□□ 0.22
BRCA1P38398 AC090825.2-201ENST00000557959 739 ntBASIC16.39■□□□□ 0.22
BRCA1P38398 AP001120.3-201ENST00000585729 489 ntBASIC16.39■□□□□ 0.22
BRCA1P38398 LINC00869-208ENST00000621156 737 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
BRCA1P38398 AC244097.1-201ENST00000621631 1216 ntBASIC16.39■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms