Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
BDNFP23560 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
BDNFP23560 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC14.89□□□□□ -0.03
BDNFP23560 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
BDNFP23560 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC14.89□□□□□ -0.03
BDNFP23560 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.89□□□□□ -0.03
BDNFP23560 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC14.89□□□□□ -0.03
BDNFP23560 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
BDNFP23560 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
BDNFP23560 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
BDNFP23560 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
BDNFP23560 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC14.89□□□□□ -0.03
BDNFP23560 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC14.89□□□□□ -0.03
BDNFP23560 GUSBP10-201ENST00000417412 665 ntBASIC14.89□□□□□ -0.03
BDNFP23560 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
BDNFP23560 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
BDNFP23560 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
BDNFP23560 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
BDNFP23560 AC018638.5-201ENST00000450885 754 ntBASIC14.89□□□□□ -0.03
BDNFP23560 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC14.89□□□□□ -0.03
BDNFP23560 MPRIPP1-201ENST00000452433 1089 ntBASIC14.89□□□□□ -0.03
BDNFP23560 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC14.89□□□□□ -0.03
BDNFP23560 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC14.89□□□□□ -0.03
BDNFP23560 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC14.89□□□□□ -0.03
BDNFP23560 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC14.89□□□□□ -0.03
BDNFP23560 MIR3180-2-201ENST00000581748 88 ntBASIC14.89□□□□□ -0.03
BDNFP23560 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
BDNFP23560 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC14.89□□□□□ -0.03
BDNFP23560 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC14.89□□□□□ -0.03
BDNFP23560 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.89□□□□□ -0.03
BDNFP23560 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
BDNFP23560 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
BDNFP23560 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC14.89□□□□□ -0.03
BDNFP23560 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
BDNFP23560 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.89□□□□□ -0.03
BDNFP23560 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
BDNFP23560 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.89□□□□□ -0.03
BDNFP23560 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC14.89□□□□□ -0.03
BDNFP23560 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
BDNFP23560 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
BDNFP23560 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
BDNFP23560 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC14.89□□□□□ -0.03
BDNFP23560 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
BDNFP23560 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC14.88□□□□□ -0.03
BDNFP23560 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC14.88□□□□□ -0.03
BDNFP23560 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC14.88□□□□□ -0.03
BDNFP23560 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
BDNFP23560 GOLGA8EP-201ENST00000530246 1959 ntBASIC14.88□□□□□ -0.03
BDNFP23560 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC14.88□□□□□ -0.03
BDNFP23560 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC14.88□□□□□ -0.03
BDNFP23560 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 LINC00265-2P-201ENST00000413372 782 ntBASIC14.88□□□□□ -0.03
BDNFP23560 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC14.88□□□□□ -0.03
BDNFP23560 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC14.88□□□□□ -0.03
BDNFP23560 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC14.88□□□□□ -0.03
BDNFP23560 AC079112.1-201ENST00000454972 939 ntBASIC14.88□□□□□ -0.03
BDNFP23560 RN7SL788P-201ENST00000460504 316 ntBASIC14.88□□□□□ -0.03
BDNFP23560 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC14.88□□□□□ -0.03
BDNFP23560 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC14.88□□□□□ -0.03
BDNFP23560 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC14.88□□□□□ -0.03
BDNFP23560 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 OR5BD1P-201ENST00000532527 817 ntBASIC14.88□□□□□ -0.03
BDNFP23560 NAA40-205ENST00000539656 577 ntTSL 4 BASIC14.88□□□□□ -0.03
BDNFP23560 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC14.88□□□□□ -0.03
BDNFP23560 MIR5572-201ENST00000583188 137 ntBASIC14.88□□□□□ -0.03
BDNFP23560 RN7SL555P-201ENST00000584742 339 ntBASIC14.88□□□□□ -0.03
BDNFP23560 MIR2392-201ENST00000584881 84 ntBASIC14.88□□□□□ -0.03
BDNFP23560 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC14.88□□□□□ -0.03
BDNFP23560 AC005618.3-201ENST00000624928 458 ntBASIC14.88□□□□□ -0.03
BDNFP23560 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC14.88□□□□□ -0.03
BDNFP23560 RETN-203ENST00000629642 400 ntTSL 5 BASIC14.88□□□□□ -0.03
BDNFP23560 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
BDNFP23560 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
BDNFP23560 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.88□□□□□ -0.03
BDNFP23560 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
BDNFP23560 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
BDNFP23560 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
BDNFP23560 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
BDNFP23560 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
BDNFP23560 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
BDNFP23560 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
BDNFP23560 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
BDNFP23560 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms