Protein–RNA interactions for Protein: P01562

IFNA1, Interferon alpha-1/13, humanhuman

Predictions only

Length 189 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFNA1P01562 KRT18P3-201ENST00000451602 1288 ntBASIC11.23□□□□□ -0.61
IFNA1P01562 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC11.23□□□□□ -0.61
IFNA1P01562 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
IFNA1P01562 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC11.23□□□□□ -0.61
IFNA1P01562 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC11.23□□□□□ -0.61
IFNA1P01562 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC11.23□□□□□ -0.61
IFNA1P01562 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC11.23□□□□□ -0.61
IFNA1P01562 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC11.23□□□□□ -0.61
IFNA1P01562 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
IFNA1P01562 CALM3-211ENST00000598871 561 ntTSL 4 BASIC11.23□□□□□ -0.61
IFNA1P01562 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
IFNA1P01562 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
IFNA1P01562 TUBB4AP1-201ENST00000450755 1325 ntBASIC11.23□□□□□ -0.61
IFNA1P01562 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
IFNA1P01562 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
IFNA1P01562 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
IFNA1P01562 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
IFNA1P01562 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
IFNA1P01562 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC11.23□□□□□ -0.61
IFNA1P01562 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
IFNA1P01562 PCDH20-201ENST00000409204 4778 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
IFNA1P01562 AC055713.1-201ENST00000498967 8279 ntTSL 2 BASIC11.23□□□□□ -0.61
IFNA1P01562 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
IFNA1P01562 SHC1P1-201ENST00000425230 1745 ntBASIC11.23□□□□□ -0.61
IFNA1P01562 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC11.23□□□□□ -0.61
IFNA1P01562 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
IFNA1P01562 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
IFNA1P01562 PAX8-202ENST00000263335 3735 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
IFNA1P01562 DRG2-202ENST00000395726 1897 ntTSL 5 BASIC11.23□□□□□ -0.61
IFNA1P01562 KLHL23-202ENST00000392647 4077 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
IFNA1P01562 IKZF1-201ENST00000331340 6189 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
IFNA1P01562 SLC25A18-202ENST00000399813 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
IFNA1P01562 PAK3-211ENST00000518291 2098 ntTSL 5 BASIC11.23□□□□□ -0.61
IFNA1P01562 TUBB8P7-202ENST00000564451 2115 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
IFNA1P01562 TTYH3-203ENST00000403167 4263 ntTSL 5 BASIC11.23□□□□□ -0.61
IFNA1P01562 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
IFNA1P01562 TMEM192-203ENST00000506087 2225 ntTSL 2 BASIC11.23□□□□□ -0.61
IFNA1P01562 AP003969.2-201ENST00000623739 2275 ntBASIC11.23□□□□□ -0.61
IFNA1P01562 OPRK1-206ENST00000613482 4682 ntTSL 5 BASIC11.23□□□□□ -0.61
IFNA1P01562 VAMP7-202ENST00000286448 2646 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 H1FX-AS1-201ENST00000383461 2600 ntTSL 2 BASIC11.22□□□□□ -0.61
IFNA1P01562 AP002360.1-203ENST00000321844 5363 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 PKD1L2-210ENST00000533478 5669 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 PCDHB17P-202ENST00000623466 3066 ntBASIC11.22□□□□□ -0.61
IFNA1P01562 TAX1BP1-207ENST00000433216 3174 ntTSL 2 BASIC11.22□□□□□ -0.61
IFNA1P01562 TBX4-202ENST00000393853 3398 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 ANKRD17-202ENST00000358602 10784 ntAPPRIS P4 TSL 5 BASIC11.22□□□□□ -0.61
IFNA1P01562 PER1-211ENST00000581082 4521 ntTSL 5 BASIC11.22□□□□□ -0.61
IFNA1P01562 KCND3-203ENST00000369697 7396 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC11.22□□□□□ -0.61
IFNA1P01562 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 ILDR1-201ENST00000273691 2659 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
IFNA1P01562 NT5DC4-201ENST00000327581 1767 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
IFNA1P01562 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 RHBDD1-201ENST00000341329 4883 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC11.22□□□□□ -0.61
IFNA1P01562 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC11.22□□□□□ -0.61
IFNA1P01562 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 ZNF197-204ENST00000383745 2935 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC11.22□□□□□ -0.61
IFNA1P01562 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC11.22□□□□□ -0.61
IFNA1P01562 ARSEP1-201ENST00000420443 635 ntBASIC11.22□□□□□ -0.61
IFNA1P01562 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC11.22□□□□□ -0.61
IFNA1P01562 MDH2-203ENST00000432020 1548 ntTSL 2 BASIC11.22□□□□□ -0.61
IFNA1P01562 AC005237.2-201ENST00000434368 219 ntBASIC11.22□□□□□ -0.61
IFNA1P01562 POLD1-201ENST00000440232 3444 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC11.22□□□□□ -0.61
IFNA1P01562 ACTG1P14-201ENST00000446382 1122 ntBASIC11.22□□□□□ -0.61
IFNA1P01562 SLC5A11-203ENST00000449109 2069 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 USP39-207ENST00000450066 2086 ntTSL 2 BASIC11.22□□□□□ -0.61
IFNA1P01562 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC11.22□□□□□ -0.61
IFNA1P01562 RN7SL618P-201ENST00000477850 296 ntBASIC11.22□□□□□ -0.61
IFNA1P01562 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC11.22□□□□□ -0.61
IFNA1P01562 SDHAP3-202ENST00000515467 728 ntBASIC11.22□□□□□ -0.61
IFNA1P01562 RNA5SP416-201ENST00000516838 111 ntBASIC11.22□□□□□ -0.61
IFNA1P01562 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 NEU3-204ENST00000531509 2468 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 PAPLN-208ENST00000555445 4282 ntAPPRIS ALT2 TSL 2 BASIC11.22□□□□□ -0.61
IFNA1P01562 HNRNPMP1-201ENST00000560685 1768 ntBASIC11.22□□□□□ -0.61
IFNA1P01562 MAN2C1-242ENST00000569482 3177 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC11.22□□□□□ -0.61
IFNA1P01562 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC11.22□□□□□ -0.61
IFNA1P01562 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC11.22□□□□□ -0.61
IFNA1P01562 CSNK1G1-205ENST00000607537 2083 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
IFNA1P01562 GOLGA6L17P-202ENST00000614358 1398 ntBASIC11.22□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms