Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC13.03□□□□□ -0.32
NKX2-2O95096 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC13.03□□□□□ -0.32
NKX2-2O95096 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
NKX2-2O95096 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
NKX2-2O95096 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC13.03□□□□□ -0.32
NKX2-2O95096 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-2O95096 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC13.03□□□□□ -0.32
NKX2-2O95096 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
NKX2-2O95096 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
NKX2-2O95096 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
NKX2-2O95096 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC13.02□□□□□ -0.32
NKX2-2O95096 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
NKX2-2O95096 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.32
NKX2-2O95096 AC104581.4-201ENST00000623126 3052 ntBASIC13.02□□□□□ -0.32
NKX2-2O95096 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
NKX2-2O95096 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC13.02□□□□□ -0.32
NKX2-2O95096 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC13.02□□□□□ -0.32
NKX2-2O95096 AL365181.3-201ENST00000605886 3222 ntBASIC13.02□□□□□ -0.32
NKX2-2O95096 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
NKX2-2O95096 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
NKX2-2O95096 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
NKX2-2O95096 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC13.02□□□□□ -0.32
NKX2-2O95096 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC13.02□□□□□ -0.33
NKX2-2O95096 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
NKX2-2O95096 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
NKX2-2O95096 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
NKX2-2O95096 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 MIR769-201ENST00000390225 118 ntBASIC13.02□□□□□ -0.33
NKX2-2O95096 AC073869.2-201ENST00000417338 1026 ntBASIC13.02□□□□□ -0.33
NKX2-2O95096 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC13.02□□□□□ -0.33
NKX2-2O95096 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 AC006335.1-201ENST00000445200 547 ntBASIC13.02□□□□□ -0.33
NKX2-2O95096 RPSAP15-201ENST00000448168 861 ntBASIC13.02□□□□□ -0.33
NKX2-2O95096 AC073150.1-201ENST00000450406 1084 ntBASIC13.02□□□□□ -0.33
NKX2-2O95096 REEP1-202ENST00000453231 940 ntTSL 2 BASIC13.02□□□□□ -0.33
NKX2-2O95096 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC13.02□□□□□ -0.33
NKX2-2O95096 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC13.02□□□□□ -0.33
NKX2-2O95096 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
NKX2-2O95096 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC13.02□□□□□ -0.33
NKX2-2O95096 AL133467.4-201ENST00000602953 725 ntBASIC13.02□□□□□ -0.33
NKX2-2O95096 MIR6799-201ENST00000620297 69 ntBASIC13.02□□□□□ -0.33
NKX2-2O95096 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC13.02□□□□□ -0.33
NKX2-2O95096 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC13.02□□□□□ -0.33
NKX2-2O95096 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
NKX2-2O95096 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 STK25-235ENST00000543554 2556 ntTSL 2 BASIC13.02□□□□□ -0.33
NKX2-2O95096 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC13.02□□□□□ -0.33
NKX2-2O95096 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC13.02□□□□□ -0.33
NKX2-2O95096 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-2O95096 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC13.01□□□□□ -0.33
NKX2-2O95096 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-2O95096 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC13.01□□□□□ -0.33
NKX2-2O95096 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-2O95096 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-2O95096 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-2O95096 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-2O95096 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
NKX2-2O95096 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-2O95096 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
NKX2-2O95096 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC13.01□□□□□ -0.33
NKX2-2O95096 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
NKX2-2O95096 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-2O95096 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC13.01□□□□□ -0.33
NKX2-2O95096 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-2O95096 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
NKX2-2O95096 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-2O95096 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-2O95096 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-2O95096 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC13.01□□□□□ -0.33
NKX2-2O95096 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-2O95096 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
NKX2-2O95096 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-2O95096 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
NKX2-2O95096 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC13.01□□□□□ -0.33
NKX2-2O95096 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-2O95096 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
NKX2-2O95096 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC13.01□□□□□ -0.33
NKX2-2O95096 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms