Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 DUX4L31-201ENST00000446466 1136 ntBASIC14.41□□□□□ -0.1
HLA-CQ95604 AL161727.1-201ENST00000457409 530 ntBASIC14.41□□□□□ -0.1
HLA-CQ95604 CD81-209ENST00000492627 886 ntTSL 3 BASIC14.41□□□□□ -0.1
HLA-CQ95604 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC14.41□□□□□ -0.1
HLA-CQ95604 AL139099.3-201ENST00000556657 401 ntTSL 3 BASIC14.41□□□□□ -0.1
HLA-CQ95604 AC090907.2-201ENST00000559857 720 ntTSL 3 BASIC14.41□□□□□ -0.1
HLA-CQ95604 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC14.41□□□□□ -0.1
HLA-CQ95604 RPS5-205ENST00000598495 800 ntTSL 3 BASIC14.41□□□□□ -0.1
HLA-CQ95604 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC14.41□□□□□ -0.1
HLA-CQ95604 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-CQ95604 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.41□□□□□ -0.1
HLA-CQ95604 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-CQ95604 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-CQ95604 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
HLA-CQ95604 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-CQ95604 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-CQ95604 AC243964.3-201ENST00000623022 2028 ntBASIC14.41□□□□□ -0.1
HLA-CQ95604 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.41□□□□□ -0.1
HLA-CQ95604 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.41□□□□□ -0.1
HLA-CQ95604 PES1P2-201ENST00000449745 1735 ntBASIC14.41□□□□□ -0.1
HLA-CQ95604 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-CQ95604 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HLA-CQ95604 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-CQ95604 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-CQ95604 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.4□□□□□ -0.1
HLA-CQ95604 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-CQ95604 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
HLA-CQ95604 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-CQ95604 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-CQ95604 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-CQ95604 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-CQ95604 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
HLA-CQ95604 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.4□□□□□ -0.1
HLA-CQ95604 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
HLA-CQ95604 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-CQ95604 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-CQ95604 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-CQ95604 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-CQ95604 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-CQ95604 HNRNPA1P3-201ENST00000440968 551 ntBASIC14.4□□□□□ -0.1
HLA-CQ95604 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC14.4□□□□□ -0.1
HLA-CQ95604 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-CQ95604 CETN3-205ENST00000522842 664 ntTSL 2 BASIC14.4□□□□□ -0.1
HLA-CQ95604 CD44-224ENST00000526669 870 ntTSL 5 BASIC14.4□□□□□ -0.1
HLA-CQ95604 TSPAN9-IT1-201ENST00000539784 562 ntTSL 4 BASIC14.4□□□□□ -0.1
HLA-CQ95604 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC14.4□□□□□ -0.1
HLA-CQ95604 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC14.4□□□□□ -0.1
HLA-CQ95604 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-CQ95604 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC14.4□□□□□ -0.1
HLA-CQ95604 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
HLA-CQ95604 POU5F1-207ENST00000606567 1236 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-CQ95604 AC068631.1-255ENST00000608173 588 ntTSL 5 BASIC14.4□□□□□ -0.1
HLA-CQ95604 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC14.4□□□□□ -0.1
HLA-CQ95604 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.4□□□□□ -0.1
HLA-CQ95604 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-CQ95604 AC022532.1-201ENST00000624563 1728 ntBASIC14.4□□□□□ -0.1
HLA-CQ95604 TMBIM7P-203ENST00000641617 1718 ntBASIC14.4□□□□□ -0.1
HLA-CQ95604 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-CQ95604 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.4□□□□□ -0.1
HLA-CQ95604 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-CQ95604 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.4□□□□□ -0.1
HLA-CQ95604 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
HLA-CQ95604 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-CQ95604 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.39□□□□□ -0.11
HLA-CQ95604 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-CQ95604 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-CQ95604 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-CQ95604 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-CQ95604 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-CQ95604 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC14.39□□□□□ -0.11
HLA-CQ95604 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-CQ95604 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC14.39□□□□□ -0.11
HLA-CQ95604 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-CQ95604 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.39□□□□□ -0.11
HLA-CQ95604 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
HLA-CQ95604 HSD3BP1-201ENST00000286193 1111 ntBASIC14.39□□□□□ -0.11
HLA-CQ95604 CKS2-201ENST00000314355 613 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-CQ95604 MIR193A-201ENST00000384882 88 ntBASIC14.39□□□□□ -0.11
HLA-CQ95604 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC14.39□□□□□ -0.11
HLA-CQ95604 AC074019.1-201ENST00000428788 1096 ntBASIC14.39□□□□□ -0.11
HLA-CQ95604 AC004910.1-201ENST00000433493 787 ntBASIC14.39□□□□□ -0.11
HLA-CQ95604 YBX1P3-201ENST00000468366 909 ntBASIC14.39□□□□□ -0.11
HLA-CQ95604 RRNAD1-204ENST00000476229 1096 ntTSL 5 BASIC14.39□□□□□ -0.11
HLA-CQ95604 AC108112.1-201ENST00000505567 659 ntTSL 5 BASIC14.39□□□□□ -0.11
HLA-CQ95604 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC14.39□□□□□ -0.11
HLA-CQ95604 DERL2-206ENST00000572834 589 ntTSL 3 BASIC14.39□□□□□ -0.11
HLA-CQ95604 C17orf62-234ENST00000584503 584 ntTSL 2 BASIC14.39□□□□□ -0.11
HLA-CQ95604 PPY-202ENST00000587006 431 ntTSL 3 BASIC14.39□□□□□ -0.11
HLA-CQ95604 AL031768.1-201ENST00000606542 701 ntBASIC14.39□□□□□ -0.11
HLA-CQ95604 Metazoa_SRP.122-201ENST00000610476 285 ntBASIC14.39□□□□□ -0.11
HLA-CQ95604 AC108359.1-201ENST00000616451 1211 ntBASIC14.39□□□□□ -0.11
HLA-CQ95604 AC026120.2-201ENST00000617239 309 ntBASIC14.39□□□□□ -0.11
HLA-CQ95604 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-CQ95604 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
HLA-CQ95604 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-CQ95604 SFPQP1-201ENST00000446621 1786 ntBASIC14.39□□□□□ -0.11
HLA-CQ95604 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HLA-CQ95604 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-CQ95604 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
HLA-CQ95604 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms