Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A5P29400 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL4A5P29400 MKRN7P-201ENST00000433469 1371 ntBASIC16.38■□□□□ 0.21
COL4A5P29400 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A5P29400 AL031587.5-201ENST00000624344 1849 ntBASIC16.37■□□□□ 0.21
COL4A5P29400 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.37■□□□□ 0.21
COL4A5P29400 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A5P29400 SERF2-204ENST00000402131 586 ntTSL 2 BASIC16.37■□□□□ 0.21
COL4A5P29400 AC096536.3-201ENST00000415336 575 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A5P29400 YBX1P3-201ENST00000468366 909 ntBASIC16.37■□□□□ 0.21
COL4A5P29400 HCG18-241ENST00000602290 821 ntTSL 2 BASIC16.37■□□□□ 0.21
COL4A5P29400 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC16.37■□□□□ 0.21
COL4A5P29400 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
COL4A5P29400 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A5P29400 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC16.37■□□□□ 0.21
COL4A5P29400 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC16.37■□□□□ 0.21
COL4A5P29400 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A5P29400 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
COL4A5P29400 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A5P29400 AC026271.1-201ENST00000447794 1348 ntBASIC16.37■□□□□ 0.21
COL4A5P29400 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A5P29400 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A5P29400 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A5P29400 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A5P29400 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC16.37■□□□□ 0.21
COL4A5P29400 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A5P29400 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC16.37■□□□□ 0.21
COL4A5P29400 LARP4-207ENST00000518561 1578 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A5P29400 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A5P29400 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL4A5P29400 CYCS-203ENST00000409764 799 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
COL4A5P29400 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC16.37■□□□□ 0.21
COL4A5P29400 AP001092.1-201ENST00000433606 469 ntTSL 3 BASIC16.37■□□□□ 0.21
COL4A5P29400 LINC00700-202ENST00000438372 777 ntTSL 5 BASIC16.37■□□□□ 0.21
COL4A5P29400 DUX4L31-201ENST00000446466 1136 ntBASIC16.37■□□□□ 0.21
COL4A5P29400 RN7SL646P-201ENST00000492969 297 ntBASIC16.37■□□□□ 0.21
COL4A5P29400 EFNA5-204ENST00000509503 637 ntTSL 5 BASIC16.37■□□□□ 0.21
COL4A5P29400 AL139099.3-201ENST00000556657 401 ntTSL 3 BASIC16.37■□□□□ 0.21
COL4A5P29400 MDC1-209ENST00000613547 830 ntTSL 5 BASIC16.37■□□□□ 0.21
COL4A5P29400 COG6-212ENST00000630730 186 ntTSL 5 BASIC16.37■□□□□ 0.21
COL4A5P29400 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL4A5P29400 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.36■□□□□ 0.21
COL4A5P29400 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL4A5P29400 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL4A5P29400 AC140479.7-201ENST00000636301 2332 ntBASIC16.36■□□□□ 0.21
COL4A5P29400 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL4A5P29400 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL4A5P29400 AC097474.1-201ENST00000506481 1371 ntBASIC16.36■□□□□ 0.21
COL4A5P29400 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL4A5P29400 AL513497.1-201ENST00000624273 2083 ntBASIC16.36■□□□□ 0.21
COL4A5P29400 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL4A5P29400 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
COL4A5P29400 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL4A5P29400 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL4A5P29400 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL4A5P29400 CYP2B6-202ENST00000593831 1426 ntTSL 2 BASIC16.36■□□□□ 0.21
COL4A5P29400 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.36■□□□□ 0.21
COL4A5P29400 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL4A5P29400 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
COL4A5P29400 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL4A5P29400 AL031577.1-201ENST00000339867 399 ntBASIC16.36■□□□□ 0.21
COL4A5P29400 MIR181D-201ENST00000384853 137 ntBASIC16.36■□□□□ 0.21
COL4A5P29400 PIGH-210ENST00000560722 903 ntAPPRIS ALT1 TSL 2 BASIC16.36■□□□□ 0.21
COL4A5P29400 AC133555.4-201ENST00000569081 152 ntBASIC16.36■□□□□ 0.21
COL4A5P29400 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
COL4A5P29400 RN7SL162P-201ENST00000579233 292 ntBASIC16.36■□□□□ 0.21
COL4A5P29400 AC005332.2-201ENST00000590010 930 ntBASIC16.36■□□□□ 0.21
COL4A5P29400 AC136475.1-203ENST00000602756 1034 ntTSL 3 BASIC16.36■□□□□ 0.21
COL4A5P29400 OR3A1-202ENST00000615105 966 ntBASIC16.36■□□□□ 0.21
COL4A5P29400 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL4A5P29400 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC16.36■□□□□ 0.21
COL4A5P29400 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
COL4A5P29400 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC16.36■□□□□ 0.21
COL4A5P29400 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
COL4A5P29400 AC061965.1-201ENST00000560524 1465 ntBASIC16.36■□□□□ 0.21
COL4A5P29400 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL4A5P29400 DLX4-206ENST00000611342 1662 ntBASIC16.36■□□□□ 0.21
COL4A5P29400 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL4A5P29400 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC16.36■□□□□ 0.21
COL4A5P29400 BPIFB1-201ENST00000253354 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL4A5P29400 SP140L-205ENST00000458341 1727 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL4A5P29400 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
COL4A5P29400 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL4A5P29400 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL4A5P29400 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL4A5P29400 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL4A5P29400 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL4A5P29400 TISP43-202ENST00000409982 1039 ntAPPRIS P5 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL4A5P29400 ZNF32-AS2-201ENST00000418966 905 ntTSL 5 BASIC16.35■□□□□ 0.21
COL4A5P29400 AL355500.1-201ENST00000439421 297 ntTSL 3 BASIC16.35■□□□□ 0.21
COL4A5P29400 TGFA-206ENST00000445399 812 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL4A5P29400 AL161668.2-201ENST00000531638 492 ntTSL 5 BASIC16.35■□□□□ 0.21
COL4A5P29400 MST1L-204ENST00000545160 559 ntTSL 4 BASIC16.35■□□□□ 0.21
COL4A5P29400 COX14-204ENST00000550654 580 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
COL4A5P29400 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC16.35■□□□□ 0.21
COL4A5P29400 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL4A5P29400 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL4A5P29400 DCDC2B-201ENST00000409358 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL4A5P29400 TRIB1-203ENST00000520847 1332 ntTSL 2 BASIC16.35■□□□□ 0.21
COL4A5P29400 OXGR1-204ENST00000543457 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms