Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 TPI1P3-201ENST00000335020 740 ntBASIC8.41□□□□□ -1.06
APOBP04114 RN7SKP255-201ENST00000363442 313 ntBASIC8.41□□□□□ -1.06
APOBP04114 RN7SKP203-201ENST00000363618 332 ntBASIC8.41□□□□□ -1.06
APOBP04114 RN7SKP71-201ENST00000364558 318 ntBASIC8.41□□□□□ -1.06
APOBP04114 7SK.1-201ENST00000365328 331 ntBASIC8.41□□□□□ -1.06
APOBP04114 VSTM1-205ENST00000425006 608 ntAPPRIS ALT2 TSL 5 BASIC8.41□□□□□ -1.06
APOBP04114 LINC01664-202ENST00000441544 1175 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 AL110503.1-201ENST00000457224 534 ntTSL 3 BASIC8.41□□□□□ -1.06
APOBP04114 CACNA1C-IT3-201ENST00000542680 622 ntTSL 3 BASIC8.41□□□□□ -1.06
APOBP04114 MIR4539-201ENST00000579784 60 ntBASIC8.41□□□□□ -1.06
APOBP04114 ZNF551-202ENST00000596085 469 ntTSL 2 BASIC8.41□□□□□ -1.06
APOBP04114 TNFRSF10A-204ENST00000613472 978 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 KIAA0391-211ENST00000605870 1406 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 PAX6-255ENST00000639386 1723 ntTSL 5 BASIC8.41□□□□□ -1.06
APOBP04114 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 CD1A-201ENST00000289429 2096 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 NLK-203ENST00000582037 1503 ntTSL 2 BASIC8.41□□□□□ -1.06
APOBP04114 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
APOBP04114 AL359915.1-201ENST00000457719 898 ntTSL 2 BASIC8.41□□□□□ -1.06
APOBP04114 ANAPC15-209ENST00000538919 849 ntAPPRIS P3 TSL 3 BASIC8.41□□□□□ -1.06
APOBP04114 AC103810.4-201ENST00000578601 257 ntBASIC8.41□□□□□ -1.06
APOBP04114 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 CCDC159-209ENST00000588790 1408 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
APOBP04114 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
APOBP04114 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC8.41□□□□□ -1.06
APOBP04114 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
APOBP04114 GAS6-AS2-201ENST00000608651 1952 ntTSL 2 BASIC8.41□□□□□ -1.06
APOBP04114 TBC1D3P1-201ENST00000590047 1693 ntBASIC8.41□□□□□ -1.06
APOBP04114 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC8.41□□□□□ -1.06
APOBP04114 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 AL356289.1-203ENST00000439795 789 ntTSL 5 BASIC8.41□□□□□ -1.06
APOBP04114 FHIT-205ENST00000476844 1033 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 BBOX1-AS1-203ENST00000530430 879 ntTSL 4 BASIC8.41□□□□□ -1.06
APOBP04114 BBOX1-AS1-204ENST00000531363 745 ntTSL 2 BASIC8.41□□□□□ -1.06
APOBP04114 PDLIM2-218ENST00000614502 599 ntTSL 2 BASIC8.41□□□□□ -1.06
APOBP04114 AL158032.2-201ENST00000616818 195 ntBASIC8.41□□□□□ -1.06
APOBP04114 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
APOBP04114 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC8.41□□□□□ -1.06
APOBP04114 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
APOBP04114 AL928654.5-201ENST00000624831 2501 ntBASIC8.41□□□□□ -1.06
APOBP04114 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
APOBP04114 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC8.41□□□□□ -1.06
APOBP04114 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 FP671120.1-201ENST00000623664 2498 ntTSL 2 BASIC8.41□□□□□ -1.06
APOBP04114 FP236383.1-201ENST00000623860 2498 ntTSL 2 BASIC8.41□□□□□ -1.06
APOBP04114 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 MLN-202ENST00000430124 566 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 DHRSX-IT1-201ENST00000437244 651 ntTSL 5 BASIC8.41□□□□□ -1.06
APOBP04114 AC010136.1-201ENST00000450996 568 ntTSL 4 BASIC8.41□□□□□ -1.06
APOBP04114 DIS3L2P1-201ENST00000509197 559 ntBASIC8.41□□□□□ -1.06
APOBP04114 PRDX2P3-201ENST00000515779 586 ntBASIC8.41□□□□□ -1.06
APOBP04114 TRPM1-210ENST00000559179 1002 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 AC109597.2-201ENST00000569407 927 ntTSL 3 BASIC8.41□□□□□ -1.06
APOBP04114 TNNI2-206ENST00000617947 699 ntAPPRIS ALT1 TSL 5 BASIC8.41□□□□□ -1.06
APOBP04114 PPP4R1L-201ENST00000244070 1474 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
APOBP04114 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC8.4□□□□□ -1.06
APOBP04114 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 CPPED1-203ENST00000433677 1993 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
APOBP04114 CDCA7L-202ENST00000373934 1830 ntAPPRIS ALT2 TSL 2 BASIC8.4□□□□□ -1.06
APOBP04114 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC8.4□□□□□ -1.06
APOBP04114 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 PLA2G2E-201ENST00000375116 785 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 LINC01494-201ENST00000419511 1011 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 YBX1P3-201ENST00000468366 909 ntBASIC8.4□□□□□ -1.06
APOBP04114 IL32-230ENST00000551122 733 ntAPPRIS ALT2 TSL 3 BASIC8.4□□□□□ -1.06
APOBP04114 AC127496.5-202ENST00000572036 869 ntTSL 5 BASIC8.4□□□□□ -1.06
APOBP04114 MIEF2-206ENST00000578174 589 ntTSL 4 BASIC8.4□□□□□ -1.06
APOBP04114 MIR4309-201ENST00000582498 83 ntBASIC8.4□□□□□ -1.06
APOBP04114 BAP1-211ENST00000615113 489 ntBASIC8.4□□□□□ -1.06
APOBP04114 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC8.4□□□□□ -1.06
APOBP04114 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 LINC02226-201ENST00000501071 1587 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
APOBP04114 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms