Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC12.14□□□□□ -0.47
SDCBPO00560 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC12.14□□□□□ -0.47
SDCBPO00560 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
SDCBPO00560 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC12.14□□□□□ -0.47
SDCBPO00560 COX5BP1-201ENST00000507622 393 ntBASIC12.14□□□□□ -0.47
SDCBPO00560 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC12.14□□□□□ -0.47
SDCBPO00560 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC12.14□□□□□ -0.47
SDCBPO00560 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC12.14□□□□□ -0.47
SDCBPO00560 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC12.14□□□□□ -0.47
SDCBPO00560 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC12.14□□□□□ -0.47
SDCBPO00560 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC12.14□□□□□ -0.47
SDCBPO00560 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC12.14□□□□□ -0.47
SDCBPO00560 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
SDCBPO00560 AC244669.2-201ENST00000612320 853 ntBASIC12.14□□□□□ -0.47
SDCBPO00560 IGHV3-72-202ENST00000621503 303 ntBASIC12.14□□□□□ -0.47
SDCBPO00560 AC006453.4-201ENST00000636949 1252 ntBASIC12.14□□□□□ -0.47
SDCBPO00560 MVK-217ENST00000639206 367 ntTSL 5 BASIC12.14□□□□□ -0.47
SDCBPO00560 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC12.14□□□□□ -0.47
SDCBPO00560 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC12.14□□□□□ -0.47
SDCBPO00560 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC12.14□□□□□ -0.47
SDCBPO00560 AL139385.1-201ENST00000611744 3272 ntBASIC12.14□□□□□ -0.47
SDCBPO00560 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
SDCBPO00560 KRT8P28-201ENST00000433288 1390 ntBASIC12.14□□□□□ -0.47
SDCBPO00560 AP002761.4-201ENST00000565433 3361 ntBASIC12.14□□□□□ -0.47
SDCBPO00560 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
SDCBPO00560 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC12.14□□□□□ -0.47
SDCBPO00560 ADAMTSL2-201ENST00000354484 4068 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 ETS2-201ENST00000360214 3936 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
SDCBPO00560 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC12.14□□□□□ -0.47
SDCBPO00560 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
SDCBPO00560 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
SDCBPO00560 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
SDCBPO00560 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC12.13□□□□□ -0.47
SDCBPO00560 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC12.13□□□□□ -0.47
SDCBPO00560 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC12.13□□□□□ -0.47
SDCBPO00560 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
SDCBPO00560 NIN-206ENST00000453196 6785 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
SDCBPO00560 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 SNX21-203ENST00000372541 771 ntTSL 2 BASIC12.13□□□□□ -0.47
SDCBPO00560 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
SDCBPO00560 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC12.13□□□□□ -0.47
SDCBPO00560 COX5BP8-201ENST00000416911 349 ntBASIC12.13□□□□□ -0.47
SDCBPO00560 CD8B2-202ENST00000417670 633 ntBASIC12.13□□□□□ -0.47
SDCBPO00560 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC12.13□□□□□ -0.47
SDCBPO00560 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 ARSEP1-201ENST00000420443 635 ntBASIC12.13□□□□□ -0.47
SDCBPO00560 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC12.13□□□□□ -0.47
SDCBPO00560 TAF8-206ENST00000472818 719 ntTSL 2 BASIC12.13□□□□□ -0.47
SDCBPO00560 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC12.13□□□□□ -0.47
SDCBPO00560 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC12.13□□□□□ -0.47
SDCBPO00560 AC078819.1-201ENST00000547454 765 ntBASIC12.13□□□□□ -0.47
SDCBPO00560 AC012085.1-201ENST00000548270 765 ntBASIC12.13□□□□□ -0.47
SDCBPO00560 KRT90P-201ENST00000549264 1064 ntBASIC12.13□□□□□ -0.47
SDCBPO00560 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC12.13□□□□□ -0.47
SDCBPO00560 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC12.13□□□□□ -0.47
SDCBPO00560 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC12.13□□□□□ -0.47
SDCBPO00560 STX3-207ENST00000633708 3111 ntTSL 5 BASIC12.13□□□□□ -0.47
SDCBPO00560 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
SDCBPO00560 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 SEZ6L-201ENST00000248933 3248 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 SEZ6L-210ENST00000629590 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC12.13□□□□□ -0.47
SDCBPO00560 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
SDCBPO00560 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC12.13□□□□□ -0.47
SDCBPO00560 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC12.13□□□□□ -0.47
SDCBPO00560 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
SDCBPO00560 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
SDCBPO00560 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC12.12□□□□□ -0.47
SDCBPO00560 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC12.12□□□□□ -0.47
SDCBPO00560 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC12.12□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms