Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 RN7SL11P-201ENST00000471305 293 ntBASIC12.69□□□□□ -0.38
H3F3AP84243 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC12.69□□□□□ -0.38
H3F3AP84243 RN7SL258P-201ENST00000478664 300 ntBASIC12.69□□□□□ -0.38
H3F3AP84243 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
H3F3AP84243 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC12.69□□□□□ -0.38
H3F3AP84243 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
H3F3AP84243 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC12.69□□□□□ -0.38
H3F3AP84243 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
H3F3AP84243 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC12.69□□□□□ -0.38
H3F3AP84243 AP001505.2-201ENST00000616815 443 ntBASIC12.69□□□□□ -0.38
H3F3AP84243 RCC2P1-201ENST00000452257 1476 ntBASIC12.69□□□□□ -0.38
H3F3AP84243 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC12.69□□□□□ -0.38
H3F3AP84243 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
H3F3AP84243 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
H3F3AP84243 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
H3F3AP84243 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
H3F3AP84243 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
H3F3AP84243 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
H3F3AP84243 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
H3F3AP84243 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
H3F3AP84243 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
H3F3AP84243 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
H3F3AP84243 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
H3F3AP84243 CICP20-201ENST00000443330 2801 ntBASIC12.69□□□□□ -0.38
H3F3AP84243 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC12.69□□□□□ -0.38
H3F3AP84243 LINC02486-201ENST00000604157 3000 ntBASIC12.69□□□□□ -0.38
H3F3AP84243 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC12.69□□□□□ -0.38
H3F3AP84243 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
H3F3AP84243 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
H3F3AP84243 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
H3F3AP84243 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC12.69□□□□□ -0.38
H3F3AP84243 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC12.68□□□□□ -0.38
H3F3AP84243 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
H3F3AP84243 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC12.68□□□□□ -0.38
H3F3AP84243 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC12.68□□□□□ -0.38
H3F3AP84243 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC12.68□□□□□ -0.38
H3F3AP84243 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
H3F3AP84243 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
H3F3AP84243 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC12.68□□□□□ -0.38
H3F3AP84243 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
H3F3AP84243 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 PDIA3P2-201ENST00000428073 158 ntBASIC12.68□□□□□ -0.38
H3F3AP84243 AK2P2-201ENST00000439142 405 ntBASIC12.68□□□□□ -0.38
H3F3AP84243 AC073150.1-201ENST00000450406 1084 ntBASIC12.68□□□□□ -0.38
H3F3AP84243 AC012618.1-201ENST00000461223 412 ntBASIC12.68□□□□□ -0.38
H3F3AP84243 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC12.68□□□□□ -0.38
H3F3AP84243 NOP2-211ENST00000540228 668 ntTSL 2 BASIC12.68□□□□□ -0.38
H3F3AP84243 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC12.68□□□□□ -0.38
H3F3AP84243 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC12.68□□□□□ -0.38
H3F3AP84243 ELP5-212ENST00000574255 671 ntTSL 2 BASIC12.68□□□□□ -0.38
H3F3AP84243 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
H3F3AP84243 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC12.68□□□□□ -0.38
H3F3AP84243 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
H3F3AP84243 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC12.68□□□□□ -0.38
H3F3AP84243 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC12.68□□□□□ -0.38
H3F3AP84243 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC12.68□□□□□ -0.38
H3F3AP84243 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC12.68□□□□□ -0.38
H3F3AP84243 GOLGA8IP-202ENST00000611635 2100 ntBASIC12.68□□□□□ -0.38
H3F3AP84243 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
H3F3AP84243 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
H3F3AP84243 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
H3F3AP84243 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC12.67□□□□□ -0.38
H3F3AP84243 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
H3F3AP84243 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
H3F3AP84243 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC12.67□□□□□ -0.38
H3F3AP84243 AC023794.5-201ENST00000564380 2157 ntBASIC12.67□□□□□ -0.38
H3F3AP84243 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
H3F3AP84243 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
H3F3AP84243 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
H3F3AP84243 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
H3F3AP84243 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
H3F3AP84243 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
H3F3AP84243 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
H3F3AP84243 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
H3F3AP84243 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC12.67□□□□□ -0.38
H3F3AP84243 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC12.67□□□□□ -0.38
H3F3AP84243 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
H3F3AP84243 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms