Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.42□□□□□ -0.26
RAE1P78406 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 DGCR9-201ENST00000609630 2415 ntBASIC13.42□□□□□ -0.26
RAE1P78406 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC13.42□□□□□ -0.26
RAE1P78406 AL591122.2-201ENST00000624125 1853 ntBASIC13.42□□□□□ -0.26
RAE1P78406 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
RAE1P78406 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC13.42□□□□□ -0.26
RAE1P78406 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
RAE1P78406 AC020917.4-201ENST00000623994 1999 ntBASIC13.41□□□□□ -0.26
RAE1P78406 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC13.41□□□□□ -0.26
RAE1P78406 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC13.41□□□□□ -0.26
RAE1P78406 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC13.41□□□□□ -0.26
RAE1P78406 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 AL355102.3-201ENST00000554299 1678 ntBASIC13.41□□□□□ -0.26
RAE1P78406 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC13.41□□□□□ -0.26
RAE1P78406 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC13.41□□□□□ -0.26
RAE1P78406 CARS-214ENST00000529772 2637 ntTSL 2 BASIC13.41□□□□□ -0.26
RAE1P78406 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC13.41□□□□□ -0.26
RAE1P78406 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
RAE1P78406 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC13.41□□□□□ -0.26
RAE1P78406 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC13.41□□□□□ -0.26
RAE1P78406 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC13.41□□□□□ -0.26
RAE1P78406 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC13.41□□□□□ -0.26
RAE1P78406 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC13.41□□□□□ -0.26
RAE1P78406 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.41□□□□□ -0.26
RAE1P78406 AC005740.1-201ENST00000515639 522 ntBASIC13.41□□□□□ -0.26
RAE1P78406 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC13.41□□□□□ -0.26
RAE1P78406 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC13.41□□□□□ -0.26
RAE1P78406 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC13.41□□□□□ -0.26
RAE1P78406 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC13.41□□□□□ -0.26
RAE1P78406 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC13.41□□□□□ -0.26
RAE1P78406 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC13.41□□□□□ -0.26
RAE1P78406 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC13.41□□□□□ -0.26
RAE1P78406 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC13.41□□□□□ -0.26
RAE1P78406 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC13.41□□□□□ -0.26
RAE1P78406 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
RAE1P78406 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RAE1P78406 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RAE1P78406 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
RAE1P78406 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RAE1P78406 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RAE1P78406 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
RAE1P78406 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC13.4□□□□□ -0.26
RAE1P78406 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
RAE1P78406 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
RAE1P78406 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC13.4□□□□□ -0.26
RAE1P78406 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC13.4□□□□□ -0.26
RAE1P78406 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RAE1P78406 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
RAE1P78406 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC13.4□□□□□ -0.26
RAE1P78406 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RAE1P78406 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC13.4□□□□□ -0.26
RAE1P78406 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RAE1P78406 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
RAE1P78406 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
RAE1P78406 RN7SKP214-201ENST00000364208 315 ntBASIC13.4□□□□□ -0.26
RAE1P78406 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RAE1P78406 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RAE1P78406 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RAE1P78406 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC13.4□□□□□ -0.26
RAE1P78406 BAX-205ENST00000391871 687 ntTSL 5 BASIC13.4□□□□□ -0.26
RAE1P78406 LBH-202ENST00000401506 485 ntTSL 3 BASIC13.4□□□□□ -0.26
RAE1P78406 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC13.4□□□□□ -0.26
RAE1P78406 AC108725.1-201ENST00000495472 409 ntBASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms