Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC13.16□□□□□ -0.3
RNF4P78317 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC13.16□□□□□ -0.3
RNF4P78317 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC13.16□□□□□ -0.3
RNF4P78317 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 AC007326.1-201ENST00000604539 458 ntBASIC13.16□□□□□ -0.3
RNF4P78317 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
RNF4P78317 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC13.16□□□□□ -0.3
RNF4P78317 AL139385.1-201ENST00000611744 3272 ntBASIC13.16□□□□□ -0.3
RNF4P78317 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
RNF4P78317 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
RNF4P78317 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC13.16□□□□□ -0.3
RNF4P78317 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
RNF4P78317 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC13.16□□□□□ -0.3
RNF4P78317 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNF4P78317 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC13.16□□□□□ -0.3
RNF4P78317 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
RNF4P78317 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC13.15□□□□□ -0.3
RNF4P78317 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 ST20-AS1-201ENST00000560255 4223 ntBASIC13.15□□□□□ -0.3
RNF4P78317 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC13.15□□□□□ -0.3
RNF4P78317 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 AL807761.2-201ENST00000422849 729 ntBASIC13.15□□□□□ -0.3
RNF4P78317 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC13.15□□□□□ -0.3
RNF4P78317 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC13.15□□□□□ -0.3
RNF4P78317 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC13.15□□□□□ -0.3
RNF4P78317 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC13.15□□□□□ -0.3
RNF4P78317 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC13.15□□□□□ -0.3
RNF4P78317 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC13.15□□□□□ -0.3
RNF4P78317 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
RNF4P78317 SIGLEC18P-201ENST00000602271 909 ntBASIC13.15□□□□□ -0.3
RNF4P78317 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
RNF4P78317 AC015967.2-201ENST00000624092 234 ntBASIC13.15□□□□□ -0.3
RNF4P78317 AC006435.4-201ENST00000625037 234 ntBASIC13.15□□□□□ -0.3
RNF4P78317 AL356737.1-201ENST00000634391 234 ntBASIC13.15□□□□□ -0.3
RNF4P78317 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 GRK6P1-201ENST00000400595 1711 ntBASIC13.15□□□□□ -0.3
RNF4P78317 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
RNF4P78317 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC13.15□□□□□ -0.3
RNF4P78317 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 DDC-213ENST00000617822 1809 ntTSL 3 BASIC13.15□□□□□ -0.3
RNF4P78317 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC13.15□□□□□ -0.3
RNF4P78317 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC13.15□□□□□ -0.3
RNF4P78317 AC067931.2-201ENST00000623655 2003 ntBASIC13.15□□□□□ -0.3
RNF4P78317 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNF4P78317 LINC02486-201ENST00000604157 3000 ntBASIC13.15□□□□□ -0.3
RNF4P78317 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
RNF4P78317 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.31
RNF4P78317 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.31
RNF4P78317 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.31
RNF4P78317 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
RNF4P78317 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC13.14□□□□□ -0.31
RNF4P78317 PTENP1-202ENST00000532280 3996 ntBASIC13.14□□□□□ -0.31
RNF4P78317 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RNF4P78317 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
RNF4P78317 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
RNF4P78317 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC13.14□□□□□ -0.31
RNF4P78317 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC13.14□□□□□ -0.31
RNF4P78317 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC13.14□□□□□ -0.31
RNF4P78317 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RNF4P78317 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RNF4P78317 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RNF4P78317 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC13.14□□□□□ -0.31
RNF4P78317 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms