Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
SOX2P48431 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 AL391647.1-201ENST00000395664 511 ntBASIC12.57□□□□□ -0.4
SOX2P48431 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC12.57□□□□□ -0.4
SOX2P48431 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC12.57□□□□□ -0.4
SOX2P48431 AC106760.1-201ENST00000508690 800 ntBASIC12.57□□□□□ -0.4
SOX2P48431 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC12.57□□□□□ -0.4
SOX2P48431 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC12.57□□□□□ -0.4
SOX2P48431 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC12.57□□□□□ -0.4
SOX2P48431 TNC-212ENST00000542877 5517 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC12.57□□□□□ -0.4
SOX2P48431 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC12.57□□□□□ -0.4
SOX2P48431 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC12.57□□□□□ -0.4
SOX2P48431 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC12.57□□□□□ -0.4
SOX2P48431 AC027601.3-201ENST00000622907 509 ntBASIC12.57□□□□□ -0.4
SOX2P48431 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC12.57□□□□□ -0.4
SOX2P48431 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC12.57□□□□□ -0.4
SOX2P48431 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC12.57□□□□□ -0.4
SOX2P48431 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC12.57□□□□□ -0.4
SOX2P48431 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC12.57□□□□□ -0.4
SOX2P48431 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
SOX2P48431 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 BEND3P3-201ENST00000611030 2440 ntBASIC12.57□□□□□ -0.4
SOX2P48431 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
SOX2P48431 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
SOX2P48431 ZNF71-201ENST00000328070 5428 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 AC004623.1-201ENST00000624592 2127 ntBASIC12.56□□□□□ -0.4
SOX2P48431 DLGAP1-203ENST00000400147 5258 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 DLGAP1-206ENST00000400155 5257 ntTSL 2 BASIC12.56□□□□□ -0.4
SOX2P48431 AC009474.1-201ENST00000455096 1565 ntBASIC12.56□□□□□ -0.4
SOX2P48431 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
SOX2P48431 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
SOX2P48431 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC12.56□□□□□ -0.4
SOX2P48431 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
SOX2P48431 RPF1-202ENST00000370656 724 ntTSL 2 BASIC12.56□□□□□ -0.4
SOX2P48431 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 GAS5-209ENST00000430245 723 ntTSL 3 BASIC12.56□□□□□ -0.4
SOX2P48431 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC12.56□□□□□ -0.4
SOX2P48431 AK2P2-201ENST00000439142 405 ntBASIC12.56□□□□□ -0.4
SOX2P48431 AL035414.1-201ENST00000451327 857 ntBASIC12.56□□□□□ -0.4
SOX2P48431 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 AL590640.2-201ENST00000457038 527 ntBASIC12.56□□□□□ -0.4
SOX2P48431 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC12.56□□□□□ -0.4
SOX2P48431 RFPL4AP1-201ENST00000530883 850 ntBASIC12.56□□□□□ -0.4
SOX2P48431 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
SOX2P48431 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
SOX2P48431 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC12.56□□□□□ -0.4
SOX2P48431 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC12.56□□□□□ -0.4
SOX2P48431 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC12.56□□□□□ -0.4
SOX2P48431 RGS12-201ENST00000336727 4674 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
SOX2P48431 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
SOX2P48431 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
SOX2P48431 ARHGAP33-204ENST00000378944 4219 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
SOX2P48431 SEZ6L-201ENST00000248933 3248 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 SEZ6L-210ENST00000629590 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 PERP-201ENST00000421351 4290 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SOX2P48431 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
SOX2P48431 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC12.56□□□□□ -0.4
SOX2P48431 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 DHX34-201ENST00000328771 4372 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
SOX2P48431 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
SOX2P48431 FBLN2-207ENST00000492059 4193 ntAPPRIS P4 TSL 2 BASIC12.55□□□□□ -0.4
SOX2P48431 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC12.55□□□□□ -0.4
SOX2P48431 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 ANKRD30BP2-201ENST00000435744 1610 ntBASIC12.55□□□□□ -0.4
SOX2P48431 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
SOX2P48431 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
SOX2P48431 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms