Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 RCC2P8-201ENST00000502779 1035 ntBASIC13.44□□□□□ -0.26
SOX3P41225 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC13.44□□□□□ -0.26
SOX3P41225 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC13.44□□□□□ -0.26
SOX3P41225 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC13.44□□□□□ -0.26
SOX3P41225 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC13.44□□□□□ -0.26
SOX3P41225 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC13.44□□□□□ -0.26
SOX3P41225 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC13.44□□□□□ -0.26
SOX3P41225 IGHV3OR16-16-201ENST00000563644 343 ntBASIC13.44□□□□□ -0.26
SOX3P41225 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC13.44□□□□□ -0.26
SOX3P41225 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC13.44□□□□□ -0.26
SOX3P41225 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC13.44□□□□□ -0.26
SOX3P41225 AC015909.5-201ENST00000624336 2266 ntBASIC13.44□□□□□ -0.26
SOX3P41225 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC13.44□□□□□ -0.26
SOX3P41225 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
SOX3P41225 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC13.44□□□□□ -0.26
SOX3P41225 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
SOX3P41225 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
SOX3P41225 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC13.44□□□□□ -0.26
SOX3P41225 AC131212.3-201ENST00000624087 4219 ntBASIC13.44□□□□□ -0.26
SOX3P41225 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
SOX3P41225 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC13.43□□□□□ -0.26
SOX3P41225 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 AC020658.7-201ENST00000624274 2442 ntBASIC13.43□□□□□ -0.26
SOX3P41225 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC13.43□□□□□ -0.26
SOX3P41225 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
SOX3P41225 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC13.43□□□□□ -0.26
SOX3P41225 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 AC083964.2-201ENST00000623988 2396 ntBASIC13.43□□□□□ -0.26
SOX3P41225 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
SOX3P41225 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
SOX3P41225 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC13.43□□□□□ -0.26
SOX3P41225 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC13.43□□□□□ -0.26
SOX3P41225 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
SOX3P41225 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC13.43□□□□□ -0.26
SOX3P41225 HNRNPA1P41-201ENST00000397777 928 ntBASIC13.43□□□□□ -0.26
SOX3P41225 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC13.43□□□□□ -0.26
SOX3P41225 KRTAP19-9P-201ENST00000421795 191 ntBASIC13.43□□□□□ -0.26
SOX3P41225 AL008707.1-201ENST00000422498 534 ntBASIC13.43□□□□□ -0.26
SOX3P41225 AC078875.1-201ENST00000431907 724 ntBASIC13.43□□□□□ -0.26
SOX3P41225 RN7SL11P-201ENST00000471305 293 ntBASIC13.43□□□□□ -0.26
SOX3P41225 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC13.43□□□□□ -0.26
SOX3P41225 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.43□□□□□ -0.26
SOX3P41225 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC13.43□□□□□ -0.26
SOX3P41225 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC13.43□□□□□ -0.26
SOX3P41225 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC13.43□□□□□ -0.26
SOX3P41225 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
SOX3P41225 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC13.43□□□□□ -0.26
SOX3P41225 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 AC073548.1-201ENST00000624088 1882 ntBASIC13.43□□□□□ -0.26
SOX3P41225 AC100757.4-201ENST00000626934 759 ntBASIC13.43□□□□□ -0.26
SOX3P41225 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC13.43□□□□□ -0.26
SOX3P41225 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC13.43□□□□□ -0.26
SOX3P41225 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC13.43□□□□□ -0.26
SOX3P41225 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC13.43□□□□□ -0.26
SOX3P41225 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC13.43□□□□□ -0.26
SOX3P41225 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.26
SOX3P41225 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC13.43□□□□□ -0.26
SOX3P41225 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC13.43□□□□□ -0.26
SOX3P41225 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 AL359643.2-201ENST00000606227 3273 ntTSL 2 BASIC13.43□□□□□ -0.26
SOX3P41225 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
SOX3P41225 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC13.43□□□□□ -0.26
SOX3P41225 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
SOX3P41225 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
SOX3P41225 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.42□□□□□ -0.26
SOX3P41225 AC020910.6-201ENST00000623084 1459 ntBASIC13.42□□□□□ -0.26
SOX3P41225 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
SOX3P41225 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC13.42□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms