Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 KIAA1191-210ENST00000510164 1243 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL5A1P20908 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC13.19□□□□□ -0.3
COL5A1P20908 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL5A1P20908 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC13.19□□□□□ -0.3
COL5A1P20908 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL5A1P20908 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC13.19□□□□□ -0.3
COL5A1P20908 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL5A1P20908 AC137723.2-201ENST00000623540 398 ntBASIC13.19□□□□□ -0.3
COL5A1P20908 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL5A1P20908 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL5A1P20908 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC13.19□□□□□ -0.3
COL5A1P20908 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC13.19□□□□□ -0.3
COL5A1P20908 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
COL5A1P20908 MPZL3-204ENST00000527472 1381 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL5A1P20908 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC13.19□□□□□ -0.3
COL5A1P20908 AF013593.1-201ENST00000458074 1487 ntBASIC13.19□□□□□ -0.3
COL5A1P20908 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL5A1P20908 KRT8P24-201ENST00000560290 1559 ntBASIC13.19□□□□□ -0.3
COL5A1P20908 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL5A1P20908 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC13.19□□□□□ -0.3
COL5A1P20908 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL5A1P20908 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL5A1P20908 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
COL5A1P20908 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
COL5A1P20908 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL5A1P20908 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL5A1P20908 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
COL5A1P20908 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
COL5A1P20908 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC13.18□□□□□ -0.3
COL5A1P20908 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC13.18□□□□□ -0.3
COL5A1P20908 MIR632-201ENST00000385193 94 ntBASIC13.18□□□□□ -0.3
COL5A1P20908 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
COL5A1P20908 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC13.18□□□□□ -0.3
COL5A1P20908 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 KRT8P25-201ENST00000473150 1456 ntBASIC13.18□□□□□ -0.3
COL5A1P20908 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC13.18□□□□□ -0.3
COL5A1P20908 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC13.18□□□□□ -0.3
COL5A1P20908 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
COL5A1P20908 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC13.18□□□□□ -0.3
COL5A1P20908 AP000920.1-201ENST00000531824 344 ntBASIC13.18□□□□□ -0.3
COL5A1P20908 AP003040.1-201ENST00000532044 1024 ntBASIC13.18□□□□□ -0.3
COL5A1P20908 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC13.18□□□□□ -0.3
COL5A1P20908 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC13.18□□□□□ -0.3
COL5A1P20908 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 AC142086.5-202ENST00000562500 217 ntBASIC13.18□□□□□ -0.3
COL5A1P20908 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
COL5A1P20908 CCND3P2-201ENST00000579393 537 ntBASIC13.18□□□□□ -0.3
COL5A1P20908 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC13.18□□□□□ -0.3
COL5A1P20908 HIST1H3E-201ENST00000614911 462 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
COL5A1P20908 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
COL5A1P20908 AC093462.1-201ENST00000621167 1683 ntBASIC13.18□□□□□ -0.3
COL5A1P20908 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC13.18□□□□□ -0.3
COL5A1P20908 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC13.18□□□□□ -0.3
COL5A1P20908 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
COL5A1P20908 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC13.18□□□□□ -0.3
COL5A1P20908 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC13.18□□□□□ -0.3
COL5A1P20908 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
COL5A1P20908 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
COL5A1P20908 STK16-202ENST00000409260 1493 ntTSL 5 BASIC13.18□□□□□ -0.3
COL5A1P20908 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC13.18□□□□□ -0.3
COL5A1P20908 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 HSD3BP1-201ENST00000286193 1111 ntBASIC13.18□□□□□ -0.3
COL5A1P20908 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC13.18□□□□□ -0.3
COL5A1P20908 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 RPL14-203ENST00000416518 812 ntTSL 3 BASIC13.18□□□□□ -0.3
COL5A1P20908 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC13.18□□□□□ -0.3
COL5A1P20908 ARHGEF26-AS1-203ENST00000480639 582 ntTSL 2 BASIC13.18□□□□□ -0.3
COL5A1P20908 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC13.18□□□□□ -0.3
COL5A1P20908 AC011431.1-201ENST00000512971 230 ntBASIC13.18□□□□□ -0.3
COL5A1P20908 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC13.18□□□□□ -0.3
COL5A1P20908 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC13.18□□□□□ -0.3
COL5A1P20908 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL5A1P20908 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
COL5A1P20908 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC13.18□□□□□ -0.3
COL5A1P20908 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
COL5A1P20908 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL5A1P20908 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
COL5A1P20908 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms