Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC091893.1-201ENST00000503772 399 ntBASIC14.09□□□□□ -0.15
COL6A3P12111 CLNS1A-202ENST00000525064 1121 ntTSL 3 BASIC14.09□□□□□ -0.15
COL6A3P12111 AC103740.2-201ENST00000557900 1225 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A3P12111 PAX6-255ENST00000639386 1723 ntTSL 5 BASIC14.09□□□□□ -0.15
COL6A3P12111 AL031587.5-201ENST00000624344 1849 ntBASIC14.09□□□□□ -0.15
COL6A3P12111 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.09□□□□□ -0.15
COL6A3P12111 MEMO1-207ENST00000426310 1336 ntTSL 2 BASIC14.09□□□□□ -0.15
COL6A3P12111 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
COL6A3P12111 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL6A3P12111 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL6A3P12111 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.08□□□□□ -0.15
COL6A3P12111 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL6A3P12111 AC073869.1-201ENST00000415574 2762 ntBASIC14.08□□□□□ -0.15
COL6A3P12111 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL6A3P12111 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL6A3P12111 KCNK16-202ENST00000373229 1248 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
COL6A3P12111 NPPB-201ENST00000376468 694 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL6A3P12111 KRBOX4-203ENST00000377919 993 ntAPPRIS ALT2 TSL 3 BASIC14.08□□□□□ -0.15
COL6A3P12111 AP003717.2-201ENST00000534962 898 ntBASIC14.08□□□□□ -0.15
COL6A3P12111 AC005586.2-201ENST00000563946 837 ntBASIC14.08□□□□□ -0.15
COL6A3P12111 GOLGA6L2-202ENST00000345070 1972 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
COL6A3P12111 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A3P12111 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A3P12111 AC215219.1-201ENST00000400706 1817 ntBASIC14.08□□□□□ -0.16
COL6A3P12111 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A3P12111 AC005014.1-201ENST00000432006 2976 ntBASIC14.08□□□□□ -0.16
COL6A3P12111 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.08□□□□□ -0.16
COL6A3P12111 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC14.08□□□□□ -0.16
COL6A3P12111 ATP6V0D1-218ENST00000602876 1554 ntTSL 5 BASIC14.08□□□□□ -0.16
COL6A3P12111 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.08□□□□□ -0.16
COL6A3P12111 SLC25A5-201ENST00000317881 1274 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A3P12111 RN7SKP245-201ENST00000364025 320 ntBASIC14.08□□□□□ -0.16
COL6A3P12111 TCTE1-201ENST00000371504 616 ntTSL 3 BASIC14.08□□□□□ -0.16
COL6A3P12111 SERF2-205ENST00000403425 690 ntTSL 2 BASIC14.08□□□□□ -0.16
COL6A3P12111 CD81-209ENST00000492627 886 ntTSL 3 BASIC14.08□□□□□ -0.16
COL6A3P12111 AC010395.2-201ENST00000509899 904 ntBASIC14.08□□□□□ -0.16
COL6A3P12111 MEG3-223ENST00000524131 721 ntTSL 5 BASIC14.08□□□□□ -0.16
COL6A3P12111 AC087441.1-201ENST00000531069 301 ntBASIC14.08□□□□□ -0.16
COL6A3P12111 AL606834.1-201ENST00000553836 1169 ntBASIC14.08□□□□□ -0.16
COL6A3P12111 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A3P12111 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A3P12111 ANXA3-209ENST00000512884 1335 ntTSL 5 BASIC14.08□□□□□ -0.16
COL6A3P12111 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
COL6A3P12111 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A3P12111 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A3P12111 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A3P12111 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A3P12111 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.08□□□□□ -0.16
COL6A3P12111 SEC14L2-201ENST00000402592 1229 ntTSL 2 BASIC14.08□□□□□ -0.16
COL6A3P12111 CLDN10-AS1-201ENST00000416909 895 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A3P12111 FAM138A-201ENST00000417324 1187 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A3P12111 AL132656.1-201ENST00000452173 490 ntBASIC14.08□□□□□ -0.16
COL6A3P12111 FAM138D-201ENST00000504074 1187 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A3P12111 FAM138E-201ENST00000507796 1187 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL6A3P12111 AC005726.6-201ENST00000579019 1083 ntTSL 3 BASIC14.08□□□□□ -0.16
COL6A3P12111 SNHG15-209ENST00000584686 541 ntTSL 3 BASIC14.08□□□□□ -0.16
COL6A3P12111 RN7SK-201ENST00000636484 328 ntBASIC14.08□□□□□ -0.16
COL6A3P12111 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A3P12111 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A3P12111 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A3P12111 KIR2DL4-201ENST00000345540 1447 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A3P12111 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.07□□□□□ -0.16
COL6A3P12111 CNGB1-202ENST00000311183 1633 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A3P12111 KRTAP13-1-201ENST00000355459 749 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
COL6A3P12111 EXOC7-206ENST00000406660 718 ntTSL 2 BASIC14.07□□□□□ -0.16
COL6A3P12111 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
COL6A3P12111 PGAM1P2-201ENST00000436071 725 ntBASIC14.07□□□□□ -0.16
COL6A3P12111 AC025822.1-201ENST00000455525 633 ntTSL 2 BASIC14.07□□□□□ -0.16
COL6A3P12111 RN7SL833P-201ENST00000498758 284 ntBASIC14.07□□□□□ -0.16
COL6A3P12111 ANAPC15-209ENST00000538919 849 ntAPPRIS P3 TSL 3 BASIC14.07□□□□□ -0.16
COL6A3P12111 AC010524.1-201ENST00000596488 494 ntTSL 3 BASIC14.07□□□□□ -0.16
COL6A3P12111 TTC38-207ENST00000629918 162 ntTSL 5 BASIC14.07□□□□□ -0.16
COL6A3P12111 PPIG-208ENST00000462903 1516 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A3P12111 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.07□□□□□ -0.16
COL6A3P12111 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
COL6A3P12111 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A3P12111 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.07□□□□□ -0.16
COL6A3P12111 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC14.07□□□□□ -0.16
COL6A3P12111 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A3P12111 FAM96A-201ENST00000300030 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A3P12111 UBIAD1-201ENST00000376804 825 ntTSL 2 BASIC14.07□□□□□ -0.16
COL6A3P12111 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC14.07□□□□□ -0.16
COL6A3P12111 PQLC2L-204ENST00000459838 850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A3P12111 PQLC2L-206ENST00000468043 883 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
COL6A3P12111 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC14.07□□□□□ -0.16
COL6A3P12111 RHOJ-202ENST00000555125 548 ntTSL 2 BASIC14.07□□□□□ -0.16
COL6A3P12111 MIEF2-206ENST00000578174 589 ntTSL 4 BASIC14.07□□□□□ -0.16
COL6A3P12111 AL078590.3-201ENST00000607531 750 ntTSL 3 BASIC14.07□□□□□ -0.16
COL6A3P12111 AL117379.1-201ENST00000619319 677 ntBASIC14.07□□□□□ -0.16
COL6A3P12111 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A3P12111 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A3P12111 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
COL6A3P12111 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A3P12111 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL6A3P12111 LINC01837-201ENST00000590021 1320 ntTSL 5 BASIC14.07□□□□□ -0.16
COL6A3P12111 AC011498.7-201ENST00000624986 2027 ntBASIC14.07□□□□□ -0.16
COL6A3P12111 DDX6-202ENST00000526070 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
COL6A3P12111 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL6A3P12111 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms