Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB1P09429 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB1P09429 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB1P09429 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
HMGB1P09429 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB1P09429 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB1P09429 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB1P09429 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB1P09429 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB1P09429 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB1P09429 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB1P09429 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
HMGB1P09429 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB1P09429 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB1P09429 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
HMGB1P09429 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
HMGB1P09429 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC16.71■□□□□ 0.27
HMGB1P09429 AC016700.1-201ENST00000429424 312 ntBASIC16.71■□□□□ 0.27
HMGB1P09429 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC16.71■□□□□ 0.27
HMGB1P09429 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC16.71■□□□□ 0.27
HMGB1P09429 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGB1P09429 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
HMGB1P09429 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC16.71■□□□□ 0.27
HMGB1P09429 MIR6869-201ENST00000619434 62 ntBASIC16.71■□□□□ 0.27
HMGB1P09429 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGB1P09429 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB1P09429 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
HMGB1P09429 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGB1P09429 AC025183.3-201ENST00000623526 1482 ntBASIC16.71■□□□□ 0.27
HMGB1P09429 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
HMGB1P09429 AC008620.2-201ENST00000510294 1569 ntBASIC16.71■□□□□ 0.27
HMGB1P09429 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC16.71■□□□□ 0.27
HMGB1P09429 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB1P09429 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB1P09429 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB1P09429 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
HMGB1P09429 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
HMGB1P09429 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
HMGB1P09429 AC104581.4-201ENST00000623126 3052 ntBASIC16.71■□□□□ 0.26
HMGB1P09429 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.26
HMGB1P09429 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGB1P09429 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
HMGB1P09429 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB1P09429 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB1P09429 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGB1P09429 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGB1P09429 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB1P09429 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
HMGB1P09429 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
HMGB1P09429 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB1P09429 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB1P09429 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
HMGB1P09429 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGB1P09429 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGB1P09429 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB1P09429 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB1P09429 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB1P09429 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGB1P09429 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC16.7■□□□□ 0.26
HMGB1P09429 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC16.7■□□□□ 0.26
HMGB1P09429 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB1P09429 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB1P09429 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB1P09429 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB1P09429 SNORA50C-201ENST00000408535 133 ntBASIC16.7■□□□□ 0.26
HMGB1P09429 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC16.7■□□□□ 0.26
HMGB1P09429 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC16.7■□□□□ 0.26
HMGB1P09429 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC16.7■□□□□ 0.26
HMGB1P09429 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC16.7■□□□□ 0.26
HMGB1P09429 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB1P09429 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB1P09429 RN7SL455P-201ENST00000580629 282 ntBASIC16.7■□□□□ 0.26
HMGB1P09429 AC020914.3-201ENST00000594712 304 ntBASIC16.7■□□□□ 0.26
HMGB1P09429 SNORA50.1-201ENST00000628590 135 ntBASIC16.7■□□□□ 0.26
HMGB1P09429 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC16.7■□□□□ 0.26
HMGB1P09429 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB1P09429 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGB1P09429 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB1P09429 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB1P09429 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGB1P09429 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
HMGB1P09429 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB1P09429 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
HMGB1P09429 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB1P09429 FRMPD2B-201ENST00000431305 1347 ntBASIC16.7■□□□□ 0.26
HMGB1P09429 TUBBP5-203ENST00000508529 1334 ntBASIC16.7■□□□□ 0.26
HMGB1P09429 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
HMGB1P09429 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC16.69■□□□□ 0.26
HMGB1P09429 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC16.69■□□□□ 0.26
HMGB1P09429 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC16.69■□□□□ 0.26
HMGB1P09429 AC138969.2-201ENST00000532739 9932 ntBASIC16.69■□□□□ 0.26
HMGB1P09429 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB1P09429 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms