Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 TCAF2-201ENST00000357344 2958 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 RPS15-201ENST00000233609 534 ntTSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 TEX30-203ENST00000376022 828 ntTSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 RPS20P25-201ENST00000412447 352 ntBASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 TMEM14DP-201ENST00000422205 345 ntBASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 RPL28-203ENST00000428193 573 ntTSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 C2orf27AP3-201ENST00000434123 579 ntBASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 RPL28-207ENST00000558815 616 ntTSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 ORC6-206ENST00000568364 888 ntTSL 5 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 AC110921.1-201ENST00000577544 612 ntTSL 3 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 IFT20-206ENST00000578122 834 ntTSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 IFT20-208ENST00000578985 831 ntTSL 3 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 RPS15-205ENST00000586686 562 ntTSL 5 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 RPS15-208ENST00000591804 711 ntTSL 5 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 AL354718.3-201ENST00000616414 581 ntBASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 MIR6799-201ENST00000620297 69 ntBASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 CR382287.1-201ENST00000623954 586 ntBASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 GRAMD1B-216ENST00000638157 3849 ntTSL 5 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 SPATS2-201ENST00000321898 3158 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 TRIM80P-201ENST00000455685 2848 ntBASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
DEPDC4Q8N2C3 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 AL365181.3-201ENST00000605886 3222 ntBASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
DEPDC4Q8N2C3 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms