Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC16.51■□□□□ 0.23
RHBDL3P58872 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
RHBDL3P58872 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
RHBDL3P58872 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RHBDL3P58872 SALL4P6-201ENST00000429385 1691 ntBASIC16.51■□□□□ 0.23
RHBDL3P58872 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
RHBDL3P58872 SURF4-203ENST00000371991 715 ntTSL 3 BASIC16.51■□□□□ 0.23
RHBDL3P58872 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RHBDL3P58872 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RHBDL3P58872 AC007279.1-201ENST00000448547 837 ntBASIC16.51■□□□□ 0.23
RHBDL3P58872 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC16.51■□□□□ 0.23
RHBDL3P58872 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC16.51■□□□□ 0.23
RHBDL3P58872 NSD1-211ENST00000511258 809 ntTSL 3 BASIC16.51■□□□□ 0.23
RHBDL3P58872 FAM86B3P-203ENST00000523992 854 ntBASIC16.51■□□□□ 0.23
RHBDL3P58872 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC16.51■□□□□ 0.23
RHBDL3P58872 AL359219.1-201ENST00000556311 934 ntBASIC16.51■□□□□ 0.23
RHBDL3P58872 CYP4F36P-201ENST00000589193 186 ntBASIC16.51■□□□□ 0.23
RHBDL3P58872 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
RHBDL3P58872 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC16.51■□□□□ 0.23
RHBDL3P58872 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC16.51■□□□□ 0.23
RHBDL3P58872 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
RHBDL3P58872 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC16.51■□□□□ 0.23
RHBDL3P58872 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RHBDL3P58872 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
RHBDL3P58872 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
RHBDL3P58872 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RHBDL3P58872 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC16.51■□□□□ 0.23
RHBDL3P58872 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RHBDL3P58872 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RHBDL3P58872 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
RHBDL3P58872 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RHBDL3P58872 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RHBDL3P58872 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RHBDL3P58872 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RHBDL3P58872 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
RHBDL3P58872 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC16.5■□□□□ 0.23
RHBDL3P58872 AC106827.1-201ENST00000366454 431 ntBASIC16.5■□□□□ 0.23
RHBDL3P58872 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC16.5■□□□□ 0.23
RHBDL3P58872 AL139008.1-201ENST00000437894 228 ntBASIC16.5■□□□□ 0.23
RHBDL3P58872 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC16.5■□□□□ 0.23
RHBDL3P58872 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC16.5■□□□□ 0.23
RHBDL3P58872 HNRNPA1P56-201ENST00000505767 954 ntBASIC16.5■□□□□ 0.23
RHBDL3P58872 AC106047.2-201ENST00000511723 743 ntBASIC16.5■□□□□ 0.23
RHBDL3P58872 CD44-224ENST00000526669 870 ntTSL 5 BASIC16.5■□□□□ 0.23
RHBDL3P58872 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC16.5■□□□□ 0.23
RHBDL3P58872 AC026336.4-201ENST00000624565 1050 ntBASIC16.5■□□□□ 0.23
RHBDL3P58872 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC16.5■□□□□ 0.23
RHBDL3P58872 OS9-207ENST00000439210 1946 ntTSL 2 BASIC16.5■□□□□ 0.23
RHBDL3P58872 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RHBDL3P58872 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
RHBDL3P58872 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RHBDL3P58872 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RHBDL3P58872 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.5■□□□□ 0.23
RHBDL3P58872 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RHBDL3P58872 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RHBDL3P58872 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RHBDL3P58872 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.5■□□□□ 0.23
RHBDL3P58872 AC027601.5-201ENST00000624065 2482 ntBASIC16.5■□□□□ 0.23
RHBDL3P58872 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC16.5■□□□□ 0.23
RHBDL3P58872 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RHBDL3P58872 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RHBDL3P58872 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RHBDL3P58872 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC16.49■□□□□ 0.23
RHBDL3P58872 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC16.49■□□□□ 0.23
RHBDL3P58872 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RHBDL3P58872 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC16.49■□□□□ 0.23
RHBDL3P58872 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC16.49■□□□□ 0.23
RHBDL3P58872 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RHBDL3P58872 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.49■□□□□ 0.23
RHBDL3P58872 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
RHBDL3P58872 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RHBDL3P58872 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RHBDL3P58872 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RHBDL3P58872 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC16.49■□□□□ 0.23
RHBDL3P58872 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC16.49■□□□□ 0.23
RHBDL3P58872 KRT18P4-201ENST00000422599 1288 ntBASIC16.49■□□□□ 0.23
RHBDL3P58872 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RHBDL3P58872 GULOP-201ENST00000454030 748 ntBASIC16.49■□□□□ 0.23
RHBDL3P58872 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC16.49■□□□□ 0.23
RHBDL3P58872 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
RHBDL3P58872 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC16.49■□□□□ 0.23
RHBDL3P58872 ALG1L3P-201ENST00000503331 765 ntBASIC16.49■□□□□ 0.23
RHBDL3P58872 AC087203.1-201ENST00000532111 1181 ntBASIC16.49■□□□□ 0.23
RHBDL3P58872 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
RHBDL3P58872 AC103702.1-201ENST00000548801 2630 ntBASIC16.49■□□□□ 0.23
RHBDL3P58872 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC16.49■□□□□ 0.23
RHBDL3P58872 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC16.49■□□□□ 0.23
RHBDL3P58872 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
RHBDL3P58872 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC16.49■□□□□ 0.23
RHBDL3P58872 AC073869.4-201ENST00000620841 800 ntBASIC16.49■□□□□ 0.23
RHBDL3P58872 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
RHBDL3P58872 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RHBDL3P58872 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
RHBDL3P58872 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
RHBDL3P58872 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC16.49■□□□□ 0.23
RHBDL3P58872 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RHBDL3P58872 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC16.49■□□□□ 0.23
RHBDL3P58872 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC16.49■□□□□ 0.23
RHBDL3P58872 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
RHBDL3P58872 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms