Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC4P56524 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
HDAC4P56524 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC4P56524 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC4P56524 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC4P56524 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC14.87□□□□□ -0.03
HDAC4P56524 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC4P56524 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC14.87□□□□□ -0.03
HDAC4P56524 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC4P56524 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
HDAC4P56524 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC14.87□□□□□ -0.03
HDAC4P56524 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 AC089987.1-201ENST00000551654 2209 ntBASIC14.86□□□□□ -0.03
HDAC4P56524 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC14.86□□□□□ -0.03
HDAC4P56524 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
HDAC4P56524 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
HDAC4P56524 AC130686.1-201ENST00000622936 2466 ntBASIC14.86□□□□□ -0.03
HDAC4P56524 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC14.86□□□□□ -0.03
HDAC4P56524 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
HDAC4P56524 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 HMGA1P1-201ENST00000415560 1062 ntBASIC14.86□□□□□ -0.03
HDAC4P56524 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC14.86□□□□□ -0.03
HDAC4P56524 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC14.86□□□□□ -0.03
HDAC4P56524 EIF4HP1-201ENST00000453115 687 ntBASIC14.86□□□□□ -0.03
HDAC4P56524 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC14.86□□□□□ -0.03
HDAC4P56524 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC14.86□□□□□ -0.03
HDAC4P56524 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
HDAC4P56524 AC093752.3-201ENST00000567343 901 ntBASIC14.86□□□□□ -0.03
HDAC4P56524 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC14.86□□□□□ -0.03
HDAC4P56524 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC14.86□□□□□ -0.03
HDAC4P56524 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
HDAC4P56524 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC14.86□□□□□ -0.03
HDAC4P56524 AL022334.2-201ENST00000610000 484 ntBASIC14.86□□□□□ -0.03
HDAC4P56524 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC14.86□□□□□ -0.03
HDAC4P56524 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC14.86□□□□□ -0.03
HDAC4P56524 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
HDAC4P56524 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC14.86□□□□□ -0.03
HDAC4P56524 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC14.86□□□□□ -0.03
HDAC4P56524 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC14.86□□□□□ -0.03
HDAC4P56524 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC14.86□□□□□ -0.03
HDAC4P56524 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
HDAC4P56524 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
HDAC4P56524 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
HDAC4P56524 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC14.85□□□□□ -0.03
HDAC4P56524 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC14.85□□□□□ -0.03
HDAC4P56524 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC14.85□□□□□ -0.03
HDAC4P56524 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC14.85□□□□□ -0.03
HDAC4P56524 AC072061.1-201ENST00000569710 2234 ntBASIC14.85□□□□□ -0.03
HDAC4P56524 BRD7P5-201ENST00000299197 1822 ntBASIC14.85□□□□□ -0.03
HDAC4P56524 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 STK26-204ENST00000481105 1835 ntTSL 2 BASIC14.85□□□□□ -0.03
HDAC4P56524 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
HDAC4P56524 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 SDCCAG3P2-201ENST00000326105 1023 ntBASIC14.85□□□□□ -0.03
HDAC4P56524 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC14.85□□□□□ -0.03
HDAC4P56524 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
HDAC4P56524 RNA5SP359-201ENST00000364838 113 ntBASIC14.85□□□□□ -0.03
HDAC4P56524 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 MIR1247-201ENST00000408206 136 ntBASIC14.85□□□□□ -0.03
HDAC4P56524 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC14.85□□□□□ -0.03
HDAC4P56524 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC14.85□□□□□ -0.03
HDAC4P56524 CD164-210ENST00000512821 964 ntTSL 2 BASIC14.85□□□□□ -0.03
HDAC4P56524 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 NAT9-222ENST00000583476 583 ntTSL 3 BASIC14.85□□□□□ -0.03
HDAC4P56524 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HDAC4P56524 AL805961.1-203ENST00000641078 1258 ntBASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms