Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC16.42■□□□□ 0.22
COL4A5P29400 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A5P29400 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.42■□□□□ 0.22
COL4A5P29400 PNLIP-201ENST00000369221 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A5P29400 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A5P29400 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC16.42■□□□□ 0.22
COL4A5P29400 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A5P29400 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
COL4A5P29400 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC16.42■□□□□ 0.22
COL4A5P29400 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL4A5P29400 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 EDF1-201ENST00000224073 640 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 PCP2-201ENST00000311069 776 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 EDDM3B-201ENST00000326783 896 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 LINC00449-201ENST00000366259 872 ntTSL 2 BASIC16.41■□□□□ 0.22
COL4A5P29400 PPIL3-205ENST00000409449 756 ntTSL 5 BASIC16.41■□□□□ 0.22
COL4A5P29400 LINC00484-201ENST00000414768 561 ntTSL 5 BASIC16.41■□□□□ 0.22
COL4A5P29400 RBMX2P5-201ENST00000424312 969 ntBASIC16.41■□□□□ 0.22
COL4A5P29400 TULP3P1-202ENST00000453253 1291 ntBASIC16.41■□□□□ 0.22
COL4A5P29400 IGKV3-11-201ENST00000483158 392 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
COL4A5P29400 ALDOAP1-201ENST00000491506 1078 ntBASIC16.41■□□□□ 0.22
COL4A5P29400 AC114939.1-201ENST00000520980 514 ntTSL 5 BASIC16.41■□□□□ 0.22
COL4A5P29400 SAA2-206ENST00000530400 323 ntTSL 3 BASIC16.41■□□□□ 0.22
COL4A5P29400 IMMP1L-213ENST00000533642 314 ntTSL 2 BASIC16.41■□□□□ 0.22
COL4A5P29400 AC025576.1-201ENST00000536455 462 ntTSL 5 BASIC16.41■□□□□ 0.22
COL4A5P29400 AC010319.2-201ENST00000594663 892 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
COL4A5P29400 AL353581.1-201ENST00000606916 1224 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 NRSN2-206ENST00000608736 712 ntTSL 3 BASIC16.41■□□□□ 0.22
COL4A5P29400 AC211476.2-201ENST00000608799 708 ntBASIC16.41■□□□□ 0.22
COL4A5P29400 TRPC5OS-203ENST00000635763 955 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
COL4A5P29400 AC111188.1-201ENST00000525758 1833 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
COL4A5P29400 APEX1-201ENST00000216714 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
COL4A5P29400 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
COL4A5P29400 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 HAO1-201ENST00000378789 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
COL4A5P29400 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 AC012358.2-201ENST00000430010 1434 ntBASIC16.41■□□□□ 0.22
COL4A5P29400 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL4A5P29400 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC16.41■□□□□ 0.22
COL4A5P29400 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A5P29400 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A5P29400 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
COL4A5P29400 SLC25A5-201ENST00000317881 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A5P29400 RNA5SP84-201ENST00000364740 107 ntBASIC16.4■□□□□ 0.22
COL4A5P29400 IGHV3-66-201ENST00000390632 427 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
COL4A5P29400 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A5P29400 ASLP1-201ENST00000428790 637 ntBASIC16.4■□□□□ 0.22
COL4A5P29400 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC16.4■□□□□ 0.22
COL4A5P29400 TRAPPC4-212ENST00000533058 1209 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A5P29400 DDX11L8-201ENST00000535849 366 ntBASIC16.4■□□□□ 0.22
COL4A5P29400 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL4A5P29400 PEX11A-204ENST00000561224 529 ntTSL 4 BASIC16.4■□□□□ 0.22
COL4A5P29400 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A5P29400 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC16.4■□□□□ 0.22
COL4A5P29400 AC007998.2-201ENST00000589258 455 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
COL4A5P29400 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC16.4■□□□□ 0.22
COL4A5P29400 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC16.4■□□□□ 0.22
COL4A5P29400 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
COL4A5P29400 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A5P29400 MCOLN3-201ENST00000341115 1762 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A5P29400 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A5P29400 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A5P29400 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A5P29400 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
COL4A5P29400 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A5P29400 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
COL4A5P29400 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
COL4A5P29400 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A5P29400 GOLGA8G-203ENST00000525590 2009 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
COL4A5P29400 GOLGA8F-202ENST00000532622 2009 ntAPPRIS P5 TSL 5 BASIC16.4■□□□□ 0.22
COL4A5P29400 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
COL4A5P29400 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A5P29400 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A5P29400 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC16.4■□□□□ 0.22
COL4A5P29400 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.4■□□□□ 0.22
COL4A5P29400 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
COL4A5P29400 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
COL4A5P29400 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC16.4■□□□□ 0.22
COL4A5P29400 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC16.4■□□□□ 0.22
COL4A5P29400 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A5P29400 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A5P29400 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A5P29400 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A5P29400 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A5P29400 CLP1-202ENST00000525602 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
COL4A5P29400 AC008080.1-201ENST00000311067 1058 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms