Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC17.98■□□□□ 0.47
RXRBP28702 SMIM6-202ENST00000579469 957 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RXRBP28702 AC010531.7-201ENST00000602665 465 ntTSL 3 BASIC17.98■□□□□ 0.47
RXRBP28702 AC090950.1-202ENST00000605733 644 ntBASIC17.98■□□□□ 0.47
RXRBP28702 AC108102.1-201ENST00000606528 548 ntTSL 3 BASIC17.98■□□□□ 0.47
RXRBP28702 MIR7704-201ENST00000610524 59 ntBASIC17.98■□□□□ 0.47
RXRBP28702 AC006449.2-201ENST00000618407 486 ntTSL 2 BASIC17.98■□□□□ 0.47
RXRBP28702 Metazoa_SRP.168-201ENST00000621608 264 ntBASIC17.98■□□□□ 0.47
RXRBP28702 PIGA-209ENST00000634582 965 ntTSL 2 BASIC17.98■□□□□ 0.47
RXRBP28702 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RXRBP28702 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RXRBP28702 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RXRBP28702 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
RXRBP28702 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
RXRBP28702 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.98■□□□□ 0.47
RXRBP28702 AL391005.1-201ENST00000623953 2435 ntBASIC17.98■□□□□ 0.47
RXRBP28702 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC17.98■□□□□ 0.47
RXRBP28702 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RXRBP28702 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17.98■□□□□ 0.47
RXRBP28702 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC17.97■□□□□ 0.47
RXRBP28702 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
RXRBP28702 AC011239.2-201ENST00000624820 1489 ntBASIC17.97■□□□□ 0.47
RXRBP28702 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 PSMB8-201ENST00000374881 1351 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.97■□□□□ 0.47
RXRBP28702 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 NDUFB11-201ENST00000276062 948 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 OR6N1-201ENST00000335094 1027 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
RXRBP28702 HMGA1P1-201ENST00000415560 1062 ntBASIC17.97■□□□□ 0.47
RXRBP28702 CHN2-214ENST00000439711 755 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC17.97■□□□□ 0.47
RXRBP28702 AC007405.2-203ENST00000455988 547 ntTSL 4 BASIC17.97■□□□□ 0.47
RXRBP28702 C5orf38-203ENST00000457752 387 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 SCOC-209ENST00000512749 841 ntAPPRIS ALT1 TSL 3 BASIC17.97■□□□□ 0.47
RXRBP28702 AC022784.6-203ENST00000520255 863 ntTSL 3 BASIC17.97■□□□□ 0.47
RXRBP28702 AKR1B1P3-201ENST00000525311 588 ntBASIC17.97■□□□□ 0.47
RXRBP28702 AL583722.3-201ENST00000553433 503 ntTSL 4 BASIC17.97■□□□□ 0.47
RXRBP28702 PTMAP5-202ENST00000607242 1162 ntBASIC17.97■□□□□ 0.47
RXRBP28702 TNNI2-206ENST00000617947 699 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
RXRBP28702 LINC00869-208ENST00000621156 737 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 AL590094.1-206ENST00000635959 478 ntTSL 5 BASIC17.97■□□□□ 0.47
RXRBP28702 CARS-216ENST00000639317 135 ntTSL 5 BASIC17.97■□□□□ 0.47
RXRBP28702 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
RXRBP28702 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
RXRBP28702 C18orf15-201ENST00000623680 2534 ntBASIC17.97■□□□□ 0.47
RXRBP28702 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RXRBP28702 CD9-212ENST00000610354 1315 ntTSL 5 BASIC17.97■□□□□ 0.47
RXRBP28702 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
RXRBP28702 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RXRBP28702 GOLGA8G-203ENST00000525590 2009 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
RXRBP28702 GOLGA8F-202ENST00000532622 2009 ntAPPRIS P5 TSL 5 BASIC17.96■□□□□ 0.47
RXRBP28702 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.96■□□□□ 0.47
RXRBP28702 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
RXRBP28702 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC17.96■□□□□ 0.47
RXRBP28702 AP005117.1-202ENST00000581724 1908 ntBASIC17.96■□□□□ 0.47
RXRBP28702 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RXRBP28702 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.96■□□□□ 0.47
RXRBP28702 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.96■□□□□ 0.47
RXRBP28702 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RXRBP28702 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RXRBP28702 MUC1-207ENST00000368392 1032 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RXRBP28702 MUC1-208ENST00000368393 937 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RXRBP28702 TRBV20OR9-2-201ENST00000379435 416 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
RXRBP28702 AIMP2-203ENST00000400479 1107 ntTSL 5 BASIC17.96■□□□□ 0.47
RXRBP28702 AP000343.1-201ENST00000440602 385 ntBASIC17.96■□□□□ 0.47
RXRBP28702 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC17.96■□□□□ 0.47
RXRBP28702 NDFIP2-AS1-201ENST00000457171 431 ntTSL 3 BASIC17.96■□□□□ 0.47
RXRBP28702 MUC1-213ENST00000462215 1189 ntTSL 2 BASIC17.96■□□□□ 0.47
RXRBP28702 OPRM1-211ENST00000518759 1060 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RXRBP28702 AC106782.3-201ENST00000563429 258 ntBASIC17.96■□□□□ 0.47
RXRBP28702 TEX38-204ENST00000564373 637 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RXRBP28702 GMFG-206ENST00000597595 758 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
RXRBP28702 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
RXRBP28702 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
RXRBP28702 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
RXRBP28702 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RXRBP28702 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RXRBP28702 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RXRBP28702 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.96■□□□□ 0.47
RXRBP28702 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
RXRBP28702 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.96■□□□□ 0.47
RXRBP28702 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
RXRBP28702 ATP6V0D1-218ENST00000602876 1554 ntTSL 5 BASIC17.96■□□□□ 0.46
RXRBP28702 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
RXRBP28702 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RXRBP28702 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.95■□□□□ 0.46
RXRBP28702 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms