Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A3P25940 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
COL5A3P25940 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC17.13■□□□□ 0.33
COL5A3P25940 LARP4-207ENST00000518561 1578 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A3P25940 AC015813.5-201ENST00000624641 1514 ntBASIC17.13■□□□□ 0.33
COL5A3P25940 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A3P25940 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A3P25940 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC17.13■□□□□ 0.33
COL5A3P25940 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A3P25940 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
COL5A3P25940 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A3P25940 AL031577.1-201ENST00000339867 399 ntBASIC17.13■□□□□ 0.33
COL5A3P25940 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A3P25940 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC17.13■□□□□ 0.33
COL5A3P25940 RBMX2P5-201ENST00000424312 969 ntBASIC17.13■□□□□ 0.33
COL5A3P25940 AC010997.2-201ENST00000427610 260 ntTSL 3 BASIC17.13■□□□□ 0.33
COL5A3P25940 AC108879.1-201ENST00000438026 828 ntTSL 3 BASIC17.13■□□□□ 0.33
COL5A3P25940 TRBV11-2-201ENST00000471935 408 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A3P25940 BACE1-207ENST00000510630 1236 ntTSL 2 BASIC17.13■□□□□ 0.33
COL5A3P25940 COX14-204ENST00000550654 580 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
COL5A3P25940 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
COL5A3P25940 IDH3A-213ENST00000559205 566 ntTSL 4 BASIC17.13■□□□□ 0.33
COL5A3P25940 AC006504.5-210ENST00000585827 539 ntTSL 4 BASIC17.13■□□□□ 0.33
COL5A3P25940 AL078624.1-201ENST00000604004 547 ntBASIC17.13■□□□□ 0.33
COL5A3P25940 AC211476.2-201ENST00000608799 708 ntBASIC17.13■□□□□ 0.33
COL5A3P25940 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC17.13■□□□□ 0.33
COL5A3P25940 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC17.13■□□□□ 0.33
COL5A3P25940 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A3P25940 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.13■□□□□ 0.33
COL5A3P25940 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A3P25940 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A3P25940 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL5A3P25940 GBAP1-208ENST00000566701 1546 ntBASIC17.12■□□□□ 0.33
COL5A3P25940 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
COL5A3P25940 ANKDD1A-207ENST00000496660 1477 ntTSL 2 BASIC17.12■□□□□ 0.33
COL5A3P25940 HSD3B2-206ENST00000543831 1783 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
COL5A3P25940 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
COL5A3P25940 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL5A3P25940 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL5A3P25940 ELP4-223ENST00000640342 1392 ntTSL 5 BASIC17.12■□□□□ 0.33
COL5A3P25940 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC17.12■□□□□ 0.33
COL5A3P25940 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC17.12■□□□□ 0.33
COL5A3P25940 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL5A3P25940 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL5A3P25940 SNORD88B-201ENST00000408454 91 ntBASIC17.12■□□□□ 0.33
COL5A3P25940 DMKN-211ENST00000436012 848 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
COL5A3P25940 ALDOAP1-201ENST00000491506 1078 ntBASIC17.12■□□□□ 0.33
COL5A3P25940 EFNA5-204ENST00000509503 637 ntTSL 5 BASIC17.12■□□□□ 0.33
COL5A3P25940 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC17.12■□□□□ 0.33
COL5A3P25940 AC133555.4-201ENST00000569081 152 ntBASIC17.12■□□□□ 0.33
COL5A3P25940 RPL26-209ENST00000584164 873 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
COL5A3P25940 BOLA3P2-201ENST00000586496 323 ntBASIC17.12■□□□□ 0.33
COL5A3P25940 Metazoa_SRP.141-201ENST00000615072 282 ntBASIC17.12■□□□□ 0.33
COL5A3P25940 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL5A3P25940 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL5A3P25940 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL5A3P25940 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC17.12■□□□□ 0.33
COL5A3P25940 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
COL5A3P25940 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL5A3P25940 PTCD2-207ENST00000503868 1653 ntTSL 2 BASIC17.12■□□□□ 0.33
COL5A3P25940 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A3P25940 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A3P25940 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
COL5A3P25940 SAP18-208ENST00000621421 2300 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A3P25940 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A3P25940 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A3P25940 KRT8P24-201ENST00000560290 1559 ntBASIC17.11■□□□□ 0.33
COL5A3P25940 DCDC2B-201ENST00000409358 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A3P25940 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A3P25940 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A3P25940 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
COL5A3P25940 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
COL5A3P25940 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A3P25940 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
COL5A3P25940 CA6-201ENST00000377436 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A3P25940 CA6-202ENST00000377442 747 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A3P25940 ZNF32-AS2-201ENST00000418966 905 ntTSL 5 BASIC17.11■□□□□ 0.33
COL5A3P25940 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC17.11■□□□□ 0.33
COL5A3P25940 PSMB8-AS1-206ENST00000458296 958 ntTSL 3 BASIC17.11■□□□□ 0.33
COL5A3P25940 RN7SL22P-201ENST00000471800 269 ntBASIC17.11■□□□□ 0.33
COL5A3P25940 AC090200.1-201ENST00000522918 590 ntTSL 2 BASIC17.11■□□□□ 0.33
COL5A3P25940 EEF1AKMT3-203ENST00000548256 561 ntTSL 4 BASIC17.11■□□□□ 0.33
COL5A3P25940 AC142381.4-201ENST00000566806 702 ntTSL 3 BASIC17.11■□□□□ 0.33
COL5A3P25940 AC142086.5-201ENST00000567619 702 ntTSL 5 BASIC17.11■□□□□ 0.33
COL5A3P25940 RN7SL300P-201ENST00000582522 318 ntBASIC17.11■□□□□ 0.33
COL5A3P25940 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC17.11■□□□□ 0.33
COL5A3P25940 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A3P25940 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A3P25940 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A3P25940 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A3P25940 HTR7P1-202ENST00000624664 4411 ntBASIC17.11■□□□□ 0.33
COL5A3P25940 AC011239.2-201ENST00000624820 1489 ntBASIC17.11■□□□□ 0.33
COL5A3P25940 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC17.11■□□□□ 0.33
COL5A3P25940 AP001258.1-201ENST00000501817 2110 ntTSL 5 BASIC17.11■□□□□ 0.33
COL5A3P25940 AC007389.3-201ENST00000420724 1656 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A3P25940 CDK7-201ENST00000256443 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A3P25940 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC17.11■□□□□ 0.33
COL5A3P25940 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
COL5A3P25940 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
COL5A3P25940 DLX4-206ENST00000611342 1662 ntBASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms