Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC14.53□□□□□ -0.08
HMGA1P17096 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
HMGA1P17096 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
HMGA1P17096 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC14.53□□□□□ -0.08
HMGA1P17096 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.53□□□□□ -0.08
HMGA1P17096 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.53□□□□□ -0.08
HMGA1P17096 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.53□□□□□ -0.08
HMGA1P17096 AC027601.5-201ENST00000624065 2482 ntBASIC14.53□□□□□ -0.08
HMGA1P17096 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HMGA1P17096 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC14.53□□□□□ -0.08
HMGA1P17096 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HMGA1P17096 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.52□□□□□ -0.08
HMGA1P17096 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
HMGA1P17096 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
HMGA1P17096 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC14.52□□□□□ -0.08
HMGA1P17096 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HMGA1P17096 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HMGA1P17096 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
HMGA1P17096 NRADDP-202ENST00000641269 1585 ntBASIC14.52□□□□□ -0.08
HMGA1P17096 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
HMGA1P17096 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC14.52□□□□□ -0.08
HMGA1P17096 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
HMGA1P17096 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
HMGA1P17096 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HMGA1P17096 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HMGA1P17096 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HMGA1P17096 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HMGA1P17096 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
HMGA1P17096 TUBB4AP1-201ENST00000450755 1325 ntBASIC14.52□□□□□ -0.08
HMGA1P17096 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HMGA1P17096 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HMGA1P17096 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
HMGA1P17096 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HMGA1P17096 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC14.52□□□□□ -0.09
HMGA1P17096 LINP1-201ENST00000417112 917 ntTSL 2 BASIC14.52□□□□□ -0.09
HMGA1P17096 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC14.52□□□□□ -0.09
HMGA1P17096 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC14.52□□□□□ -0.09
HMGA1P17096 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HMGA1P17096 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC14.52□□□□□ -0.09
HMGA1P17096 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HMGA1P17096 AL135901.1-201ENST00000451812 333 ntBASIC14.52□□□□□ -0.09
HMGA1P17096 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC14.52□□□□□ -0.09
HMGA1P17096 AC008026.2-201ENST00000495438 348 ntBASIC14.52□□□□□ -0.09
HMGA1P17096 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC14.52□□□□□ -0.09
HMGA1P17096 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC14.52□□□□□ -0.09
HMGA1P17096 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC14.52□□□□□ -0.09
HMGA1P17096 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
HMGA1P17096 CES1P2-201ENST00000566467 1242 ntBASIC14.52□□□□□ -0.09
HMGA1P17096 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC14.52□□□□□ -0.09
HMGA1P17096 GOLGA8IP-202ENST00000611635 2100 ntBASIC14.52□□□□□ -0.09
HMGA1P17096 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
HMGA1P17096 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
HMGA1P17096 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.52□□□□□ -0.09
HMGA1P17096 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
HMGA1P17096 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.52□□□□□ -0.09
HMGA1P17096 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
HMGA1P17096 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
HMGA1P17096 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HMGA1P17096 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
HMGA1P17096 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
HMGA1P17096 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HMGA1P17096 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
HMGA1P17096 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC14.51□□□□□ -0.09
HMGA1P17096 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.51□□□□□ -0.09
HMGA1P17096 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
HMGA1P17096 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
HMGA1P17096 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC14.51□□□□□ -0.09
HMGA1P17096 ACTBP14-201ENST00000411655 1089 ntBASIC14.51□□□□□ -0.09
HMGA1P17096 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC14.51□□□□□ -0.09
HMGA1P17096 AC024293.1-201ENST00000467930 498 ntBASIC14.51□□□□□ -0.09
HMGA1P17096 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC14.51□□□□□ -0.09
HMGA1P17096 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC14.51□□□□□ -0.09
HMGA1P17096 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC14.51□□□□□ -0.09
HMGA1P17096 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC14.51□□□□□ -0.09
HMGA1P17096 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC14.51□□□□□ -0.09
HMGA1P17096 AL136982.5-201ENST00000605222 294 ntBASIC14.51□□□□□ -0.09
HMGA1P17096 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms