Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 PTENP1-202ENST00000532280 3996 ntBASIC13.74□□□□□ -0.21
COL28A1Q2UY09 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 RN7SL494P-201ENST00000461517 304 ntBASIC13.74□□□□□ -0.21
COL28A1Q2UY09 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 RNA5SP417-201ENST00000516459 108 ntBASIC13.74□□□□□ -0.21
COL28A1Q2UY09 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 USP31-203ENST00000567975 2142 ntTSL 2 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 CMC2-224ENST00000630396 481 ntTSL 5 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC13.74□□□□□ -0.21
COL28A1Q2UY09 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 OR51A9P-201ENST00000422578 911 ntBASIC13.73□□□□□ -0.21
COL28A1Q2UY09 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 AL135901.1-201ENST00000451812 333 ntBASIC13.73□□□□□ -0.21
COL28A1Q2UY09 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 NEU3-207ENST00000534628 746 ntTSL 2 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 AC010632.2-201ENST00000588369 1224 ntBASIC13.73□□□□□ -0.21
COL28A1Q2UY09 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 RPS5-204ENST00000598098 536 ntTSL 2 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 AL353622.2-201ENST00000605846 425 ntBASIC13.73□□□□□ -0.21
COL28A1Q2UY09 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
COL28A1Q2UY09 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms