Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
PTPN9P43378 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC14.74□□□□□ -0.05
PTPN9P43378 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
PTPN9P43378 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
PTPN9P43378 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
PTPN9P43378 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.73□□□□□ -0.05
PTPN9P43378 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
PTPN9P43378 AC008132.1-202ENST00000342005 1389 ntBASIC14.73□□□□□ -0.05
PTPN9P43378 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC14.73□□□□□ -0.05
PTPN9P43378 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
PTPN9P43378 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC14.73□□□□□ -0.05
PTPN9P43378 AC008620.2-201ENST00000510294 1569 ntBASIC14.73□□□□□ -0.05
PTPN9P43378 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
PTPN9P43378 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC14.73□□□□□ -0.05
PTPN9P43378 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC14.73□□□□□ -0.05
PTPN9P43378 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC14.73□□□□□ -0.05
PTPN9P43378 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 MIR769-201ENST00000390225 118 ntBASIC14.73□□□□□ -0.05
PTPN9P43378 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC14.73□□□□□ -0.05
PTPN9P43378 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
PTPN9P43378 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC14.73□□□□□ -0.05
PTPN9P43378 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC14.73□□□□□ -0.05
PTPN9P43378 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC14.73□□□□□ -0.05
PTPN9P43378 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC14.73□□□□□ -0.05
PTPN9P43378 AC006335.1-201ENST00000445200 547 ntBASIC14.73□□□□□ -0.05
PTPN9P43378 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC14.73□□□□□ -0.05
PTPN9P43378 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC14.73□□□□□ -0.05
PTPN9P43378 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC14.73□□□□□ -0.05
PTPN9P43378 PFN2-206ENST00000461930 606 ntTSL 4 BASIC14.73□□□□□ -0.05
PTPN9P43378 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC14.73□□□□□ -0.05
PTPN9P43378 ALG1L13P-202ENST00000519320 584 ntBASIC14.73□□□□□ -0.05
PTPN9P43378 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC14.73□□□□□ -0.05
PTPN9P43378 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC14.73□□□□□ -0.05
PTPN9P43378 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC14.73□□□□□ -0.05
PTPN9P43378 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
PTPN9P43378 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC14.73□□□□□ -0.05
PTPN9P43378 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC14.73□□□□□ -0.05
PTPN9P43378 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC14.73□□□□□ -0.05
PTPN9P43378 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 SALL4P6-201ENST00000429385 1691 ntBASIC14.73□□□□□ -0.05
PTPN9P43378 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC14.73□□□□□ -0.05
PTPN9P43378 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.73□□□□□ -0.05
PTPN9P43378 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC14.73□□□□□ -0.05
PTPN9P43378 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC14.73□□□□□ -0.05
PTPN9P43378 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC14.73□□□□□ -0.05
PTPN9P43378 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PTPN9P43378 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
PTPN9P43378 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC14.72□□□□□ -0.05
PTPN9P43378 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
PTPN9P43378 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC14.72□□□□□ -0.05
PTPN9P43378 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC14.72□□□□□ -0.05
PTPN9P43378 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14.72□□□□□ -0.05
PTPN9P43378 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
PTPN9P43378 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC14.72□□□□□ -0.05
PTPN9P43378 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 KRTAP19-9P-201ENST00000421795 191 ntBASIC14.72□□□□□ -0.05
PTPN9P43378 AC073150.1-201ENST00000450406 1084 ntBASIC14.72□□□□□ -0.05
PTPN9P43378 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC14.72□□□□□ -0.05
PTPN9P43378 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
PTPN9P43378 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
PTPN9P43378 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PTPN9P43378 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC14.72□□□□□ -0.05
PTPN9P43378 NDUFB10P1-201ENST00000567319 521 ntBASIC14.72□□□□□ -0.05
PTPN9P43378 LINC01783-202ENST00000614408 828 ntBASIC14.72□□□□□ -0.05
PTPN9P43378 TP53-221ENST00000615910 1149 ntTSL 5 BASIC14.72□□□□□ -0.05
PTPN9P43378 BX284668.2-205ENST00000619677 828 ntBASIC14.72□□□□□ -0.05
PTPN9P43378 GPR182-203ENST00000622922 591 ntBASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms