Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.97□□□□□ -0.01
BDNFP23560 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.97□□□□□ -0.01
BDNFP23560 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
BDNFP23560 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
BDNFP23560 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.96□□□□□ -0.01
BDNFP23560 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.96□□□□□ -0.01
BDNFP23560 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
BDNFP23560 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.96□□□□□ -0.01
BDNFP23560 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.96□□□□□ -0.01
BDNFP23560 TEKT4P2-202ENST00000559466 1312 ntBASIC14.96□□□□□ -0.01
BDNFP23560 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC14.96□□□□□ -0.01
BDNFP23560 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC14.96□□□□□ -0.01
BDNFP23560 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC14.96□□□□□ -0.01
BDNFP23560 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.96□□□□□ -0.01
BDNFP23560 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC14.96□□□□□ -0.01
BDNFP23560 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC14.96□□□□□ -0.01
BDNFP23560 SAT1-201ENST00000379251 801 ntTSL 2 BASIC14.96□□□□□ -0.01
BDNFP23560 SAT1-202ENST00000379253 909 ntTSL 2 BASIC14.96□□□□□ -0.01
BDNFP23560 SAT1-203ENST00000379254 868 ntTSL 3 BASIC14.96□□□□□ -0.01
BDNFP23560 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC14.96□□□□□ -0.01
BDNFP23560 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
BDNFP23560 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC14.96□□□□□ -0.01
BDNFP23560 AC078991.1-201ENST00000437297 610 ntBASIC14.96□□□□□ -0.01
BDNFP23560 RN7SL81P-201ENST00000493781 261 ntBASIC14.96□□□□□ -0.01
BDNFP23560 ORAOV1P1-201ENST00000503108 395 ntBASIC14.96□□□□□ -0.01
BDNFP23560 GOLGA2P8-201ENST00000505201 779 ntBASIC14.96□□□□□ -0.01
BDNFP23560 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
BDNFP23560 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC14.96□□□□□ -0.01
BDNFP23560 RN7SL665P-201ENST00000578793 300 ntBASIC14.96□□□□□ -0.01
BDNFP23560 RN7SL455P-201ENST00000580629 282 ntBASIC14.96□□□□□ -0.01
BDNFP23560 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC14.96□□□□□ -0.01
BDNFP23560 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC14.96□□□□□ -0.01
BDNFP23560 AC092171.5-201ENST00000608012 942 ntBASIC14.96□□□□□ -0.01
BDNFP23560 AC007881.3-201ENST00000608897 607 ntBASIC14.96□□□□□ -0.01
BDNFP23560 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC14.96□□□□□ -0.01
BDNFP23560 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
BDNFP23560 TP53-221ENST00000615910 1149 ntTSL 5 BASIC14.96□□□□□ -0.01
BDNFP23560 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC14.96□□□□□ -0.01
BDNFP23560 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
BDNFP23560 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
BDNFP23560 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
BDNFP23560 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.96□□□□□ -0.01
BDNFP23560 AC006372.4-201ENST00000624122 1543 ntBASIC14.96□□□□□ -0.02
BDNFP23560 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.02
BDNFP23560 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.02
BDNFP23560 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
BDNFP23560 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC14.96□□□□□ -0.02
BDNFP23560 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
BDNFP23560 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14.96□□□□□ -0.02
BDNFP23560 HSPA7-201ENST00000445535 1927 ntBASIC14.96□□□□□ -0.02
BDNFP23560 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC14.95□□□□□ -0.02
BDNFP23560 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
BDNFP23560 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
BDNFP23560 CICP4-201ENST00000447359 2812 ntBASIC14.95□□□□□ -0.02
BDNFP23560 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC14.95□□□□□ -0.02
BDNFP23560 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms