Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC16.76■□□□□ 0.27
HMGB1P09429 RN7SL219P-201ENST00000582872 296 ntBASIC16.76■□□□□ 0.27
HMGB1P09429 AL451050.2-201ENST00000606967 682 ntBASIC16.76■□□□□ 0.27
HMGB1P09429 AC026740.1-201ENST00000607068 791 ntBASIC16.76■□□□□ 0.27
HMGB1P09429 AL805961.1-203ENST00000641078 1258 ntBASIC16.76■□□□□ 0.27
HMGB1P09429 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC16.76■□□□□ 0.27
HMGB1P09429 AC068760.1-201ENST00000493579 1953 ntBASIC16.76■□□□□ 0.27
HMGB1P09429 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
HMGB1P09429 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC16.76■□□□□ 0.27
HMGB1P09429 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
HMGB1P09429 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC16.75■□□□□ 0.27
HMGB1P09429 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGB1P09429 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGB1P09429 POLL-206ENST00000370172 2308 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGB1P09429 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB1P09429 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB1P09429 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB1P09429 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB1P09429 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB1P09429 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
HMGB1P09429 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
HMGB1P09429 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB1P09429 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
HMGB1P09429 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB1P09429 BAX-205ENST00000391871 687 ntTSL 5 BASIC16.75■□□□□ 0.27
HMGB1P09429 HNRNPA1P41-201ENST00000397777 928 ntBASIC16.75■□□□□ 0.27
HMGB1P09429 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB1P09429 RPS9P1-201ENST00000419943 583 ntBASIC16.75■□□□□ 0.27
HMGB1P09429 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC16.75■□□□□ 0.27
HMGB1P09429 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB1P09429 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC16.75■□□□□ 0.27
HMGB1P09429 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB1P09429 OARD1-212ENST00000482515 832 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGB1P09429 KRT8P1-201ENST00000557533 1207 ntBASIC16.75■□□□□ 0.27
HMGB1P09429 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC16.75■□□□□ 0.27
HMGB1P09429 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
HMGB1P09429 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB1P09429 AC009474.1-201ENST00000455096 1565 ntBASIC16.75■□□□□ 0.27
HMGB1P09429 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGB1P09429 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC16.75■□□□□ 0.27
HMGB1P09429 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB1P09429 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC16.75■□□□□ 0.27
HMGB1P09429 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB1P09429 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB1P09429 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
HMGB1P09429 KIAA1191-202ENST00000393725 2700 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB1P09429 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB1P09429 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
HMGB1P09429 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB1P09429 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB1P09429 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB1P09429 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGB1P09429 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
HMGB1P09429 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGB1P09429 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGB1P09429 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB1P09429 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
HMGB1P09429 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB1P09429 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB1P09429 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
HMGB1P09429 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB1P09429 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
HMGB1P09429 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB1P09429 CRCP-204ENST00000398684 492 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGB1P09429 LBH-202ENST00000401506 485 ntTSL 3 BASIC16.74■□□□□ 0.27
HMGB1P09429 PARVG-202ENST00000415224 999 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGB1P09429 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC16.74■□□□□ 0.27
HMGB1P09429 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB1P09429 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC16.74■□□□□ 0.27
HMGB1P09429 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC16.74■□□□□ 0.27
HMGB1P09429 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGB1P09429 AP001258.2-201ENST00000529891 490 ntBASIC16.74■□□□□ 0.27
HMGB1P09429 CFL1-212ENST00000531413 636 ntTSL 3 BASIC16.74■□□□□ 0.27
HMGB1P09429 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
HMGB1P09429 CMC2-204ENST00000562713 573 ntTSL 3 BASIC16.74■□□□□ 0.27
HMGB1P09429 CMC2-209ENST00000565108 399 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGB1P09429 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC16.74■□□□□ 0.27
HMGB1P09429 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB1P09429 AL645939.5-201ENST00000606834 243 ntBASIC16.74■□□□□ 0.27
HMGB1P09429 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC16.74■□□□□ 0.27
HMGB1P09429 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB1P09429 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC16.74■□□□□ 0.27
HMGB1P09429 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB1P09429 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC16.74■□□□□ 0.27
HMGB1P09429 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC16.74■□□□□ 0.27
HMGB1P09429 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HMGB1P09429 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC16.74■□□□□ 0.27
HMGB1P09429 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
HMGB1P09429 AC092053.3-201ENST00000641308 4975 ntBASIC16.74■□□□□ 0.27
HMGB1P09429 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms