Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC11.06□□□□□ -0.64
CXCL1P09341 USP2-AS1-202ENST00000500970 1784 ntTSL 2 BASIC11.06□□□□□ -0.64
CXCL1P09341 PPFIBP1-215ENST00000542629 3208 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 DUSP11-202ENST00000443070 2175 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 SLC16A2-201ENST00000587091 4161 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 CELF3-202ENST00000290585 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 CCDC148-201ENST00000283233 3122 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 HYLS1-202ENST00000425380 2061 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.64
CXCL1P09341 AC000068.1-201ENST00000431090 2097 ntTSL 2 BASIC11.06□□□□□ -0.64
CXCL1P09341 MAOA-204ENST00000542639 5438 ntTSL 2 BASIC11.06□□□□□ -0.64
CXCL1P09341 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC11.06□□□□□ -0.64
CXCL1P09341 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.64
CXCL1P09341 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 NUS1P3-201ENST00000423502 862 ntBASIC11.06□□□□□ -0.64
CXCL1P09341 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC11.06□□□□□ -0.64
CXCL1P09341 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC11.06□□□□□ -0.64
CXCL1P09341 RN7SL618P-201ENST00000477850 296 ntBASIC11.06□□□□□ -0.64
CXCL1P09341 SATB1-217ENST00000493952 626 ntTSL 3 BASIC11.06□□□□□ -0.64
CXCL1P09341 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC11.06□□□□□ -0.64
CXCL1P09341 CCND1-203ENST00000536559 553 ntTSL 3 BASIC11.06□□□□□ -0.64
CXCL1P09341 RPS15-202ENST00000585665 467 ntTSL 3 BASIC11.06□□□□□ -0.64
CXCL1P09341 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC11.06□□□□□ -0.64
CXCL1P09341 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC11.06□□□□□ -0.64
CXCL1P09341 AC004840.1-201ENST00000636359 365 ntBASIC11.06□□□□□ -0.64
CXCL1P09341 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 MAP7-208ENST00000617204 4536 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
CXCL1P09341 ABI1-212ENST00000490841 3188 ntTSL 2 BASIC11.06□□□□□ -0.64
CXCL1P09341 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC11.06□□□□□ -0.64
CXCL1P09341 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC11.06□□□□□ -0.64
CXCL1P09341 PPP1R26P1-201ENST00000474415 3613 ntBASIC11.06□□□□□ -0.64
CXCL1P09341 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC11.06□□□□□ -0.64
CXCL1P09341 AGAP12P-202ENST00000603888 2141 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 RBM39-243ENST00000528062 2421 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 TMEM199-201ENST00000292114 3148 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 DRG2-202ENST00000395726 1897 ntTSL 5 BASIC11.06□□□□□ -0.64
CXCL1P09341 PLK4-209ENST00000513090 3123 ntTSL 2 BASIC11.06□□□□□ -0.64
CXCL1P09341 STXBP1-202ENST00000373302 3967 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 TUBB3P1-201ENST00000405796 1332 ntBASIC11.06□□□□□ -0.64
CXCL1P09341 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC11.06□□□□□ -0.64
CXCL1P09341 TMEM123-202ENST00000398136 3579 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 CACNB1-212ENST00000622445 3722 ntTSL 5 BASIC11.06□□□□□ -0.64
CXCL1P09341 PARG-207ENST00000616448 3197 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
CXCL1P09341 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 COG4-202ENST00000393612 2756 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 HSPA8P9-201ENST00000485881 1943 ntBASIC11.05□□□□□ -0.64
CXCL1P09341 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 ZNF133-201ENST00000316358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 SNED1-201ENST00000310397 8174 ntAPPRIS P2 TSL 5 BASIC11.05□□□□□ -0.64
CXCL1P09341 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC11.05□□□□□ -0.64
CXCL1P09341 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 NR1H3-201ENST00000395397 1501 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 NLRP2-208ENST00000448584 3573 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC11.05□□□□□ -0.64
CXCL1P09341 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 AL357060.2-202ENST00000606998 1959 ntTSL 2 BASIC11.05□□□□□ -0.64
CXCL1P09341 ZYX-203ENST00000392910 2123 ntAPPRIS ALT2 TSL 2 BASIC11.05□□□□□ -0.64
CXCL1P09341 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
CXCL1P09341 CPA5-208ENST00000485477 2573 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 OVOL1-201ENST00000335987 3034 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 ABCB9-211ENST00000540285 3330 ntTSL 2 BASIC11.05□□□□□ -0.64
CXCL1P09341 PITRM1-201ENST00000224949 3450 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 KCNH1-205ENST00000638498 3479 ntTSL 5 BASIC11.05□□□□□ -0.64
CXCL1P09341 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC11.05□□□□□ -0.64
CXCL1P09341 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 TEX30-205ENST00000376029 959 ntTSL 2 BASIC11.05□□□□□ -0.64
CXCL1P09341 NAPB-201ENST00000377026 3837 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC11.05□□□□□ -0.64
CXCL1P09341 AL353779.1-201ENST00000434793 351 ntBASIC11.05□□□□□ -0.64
CXCL1P09341 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC11.05□□□□□ -0.64
CXCL1P09341 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 CEND1P1-201ENST00000451006 455 ntBASIC11.05□□□□□ -0.64
CXCL1P09341 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC11.05□□□□□ -0.64
CXCL1P09341 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC11.05□□□□□ -0.64
CXCL1P09341 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC11.05□□□□□ -0.64
CXCL1P09341 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
CXCL1P09341 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC11.05□□□□□ -0.64
CXCL1P09341 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC11.05□□□□□ -0.64
CXCL1P09341 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC11.05□□□□□ -0.64
CXCL1P09341 AC093520.2-201ENST00000561830 333 ntBASIC11.05□□□□□ -0.64
CXCL1P09341 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CXCL1P09341 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC11.05□□□□□ -0.64
CXCL1P09341 AC090617.6-201ENST00000572790 443 ntTSL 3 BASIC11.05□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms