Protein–RNA interactions for Protein: Q9HCM3

KIAA1549, UPF0606 protein KIAA1549, humanhuman

Predictions only

Length 1,950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KIAA1549Q9HCM3 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 KRT8P18-201ENST00000413425 1445 ntBASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 GOLGA8UP-201ENST00000527159 1755 ntBASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
KIAA1549Q9HCM3 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 AC114501.1-201ENST00000445949 172 ntBASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 TRMT112P3-201ENST00000580149 358 ntBASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 PDXDC2P-206ENST00000534700 1315 ntBASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 MSANTD2P1-201ENST00000445341 1368 ntBASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 AC025183.3-201ENST00000623526 1482 ntBASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
KIAA1549Q9HCM3 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 Z69890.1-201ENST00000382990 339 ntBASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 AC092638.2-201ENST00000441105 947 ntBASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 RN7SL470P-201ENST00000583069 259 ntBASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
KIAA1549Q9HCM3 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC12.52□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms