Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 AL031590.1-202ENST00000641466 1737 ntBASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 RER1-203ENST00000378513 3000 ntTSL 3 BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 AL031587.5-201ENST00000624344 1849 ntBASIC17.64■□□□□ 0.42
SHANK3Q9BYB0 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SHANK3Q9BYB0 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
SHANK3Q9BYB0 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC17.64■□□□□ 0.42
SHANK3Q9BYB0 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SHANK3Q9BYB0 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SHANK3Q9BYB0 SLC35A2-203ENST00000376515 1044 ntTSL 3 BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 PIGH-210ENST00000560722 903 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 RN7SL478P-201ENST00000584358 298 ntBASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 RAB11B-205ENST00000601897 577 ntTSL 3 BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 PLA2G4C-AS1-203ENST00000601950 454 ntTSL 3 BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 TNFRSF10A-204ENST00000613472 978 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 OR3A1-202ENST00000615105 966 ntBASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 TRPC5OS-203ENST00000635763 955 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 AC020763.3-201ENST00000625095 2904 ntBASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 FAM83A-AS1-202ENST00000520576 1347 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 CREB5-202ENST00000396298 2001 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 COPS5-203ENST00000517736 1621 ntTSL 5 BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 THAP4-203ENST00000402545 833 ntTSL 5 BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 UGT1A12P-201ENST00000447084 853 ntBASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 RPSAP16-201ENST00000447583 821 ntBASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 LINC00677-201ENST00000558224 486 ntTSL 3 BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 AC007223.1-201ENST00000564076 572 ntTSL 3 BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 MAFG-AS1-202ENST00000583492 969 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 TLE2-205ENST00000586422 389 ntTSL 5 BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SHANK3Q9BYB0 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 ZSCAN5DP-201ENST00000600684 1488 ntBASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 AL121753.2-201ENST00000624581 1461 ntBASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 CCDC159-209ENST00000588790 1408 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 GAST-201ENST00000329402 470 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 TCEAL5-201ENST00000372680 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 AL357079.1-203ENST00000412378 494 ntTSL 5 BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 AP001331.1-201ENST00000413008 1015 ntBASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 ZBTB46-AS1-201ENST00000435912 533 ntTSL 3 BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 PEBP1P3-201ENST00000455475 548 ntBASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 HAND2-AS1-208ENST00000504740 837 ntTSL 3 BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 KRT18P42-201ENST00000505048 1255 ntBASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 BBOX1-AS1-203ENST00000530430 879 ntTSL 4 BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 BBOX1-AS1-204ENST00000531363 745 ntTSL 2 BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 CCDC42-202ENST00000539522 1087 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 TMEM230-211ENST00000615008 594 ntTSL 4 BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.63■□□□□ 0.41
SHANK3Q9BYB0 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
SHANK3Q9BYB0 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
SHANK3Q9BYB0 ZNF33A-205ENST00000469037 1530 ntTSL 5 BASIC17.62■□□□□ 0.41
SHANK3Q9BYB0 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHANK3Q9BYB0 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHANK3Q9BYB0 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHANK3Q9BYB0 AL591499.1-201ENST00000307155 1153 ntBASIC17.62■□□□□ 0.41
SHANK3Q9BYB0 ARR3-201ENST00000307959 1292 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms