Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LRCH3Q96II8 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.34■□□□□ 0.05
LRCH3Q96II8 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
LRCH3Q96II8 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LRCH3Q96II8 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
LRCH3Q96II8 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC15.34■□□□□ 0.05
LRCH3Q96II8 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LRCH3Q96II8 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LRCH3Q96II8 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LRCH3Q96II8 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
LRCH3Q96II8 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
LRCH3Q96II8 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.34■□□□□ 0.05
LRCH3Q96II8 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LRCH3Q96II8 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LRCH3Q96II8 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LRCH3Q96II8 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
LRCH3Q96II8 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LRCH3Q96II8 C11orf53-201ENST00000280325 1208 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
LRCH3Q96II8 PAX5-203ENST00000377847 996 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LRCH3Q96II8 CYCS-203ENST00000409764 799 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
LRCH3Q96II8 AC093106.1-201ENST00000437271 352 ntBASIC15.34■□□□□ 0.05
LRCH3Q96II8 AC007881.1-201ENST00000437460 187 ntBASIC15.34■□□□□ 0.05
LRCH3Q96II8 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC15.34■□□□□ 0.05
LRCH3Q96II8 GRPEL2P1-201ENST00000453145 339 ntBASIC15.34■□□□□ 0.05
LRCH3Q96II8 RRNAD1-204ENST00000476229 1096 ntTSL 5 BASIC15.34■□□□□ 0.05
LRCH3Q96II8 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC15.34■□□□□ 0.05
LRCH3Q96II8 PAX5-213ENST00000523145 830 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LRCH3Q96II8 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC15.34■□□□□ 0.05
LRCH3Q96II8 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC15.34■□□□□ 0.05
LRCH3Q96II8 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC15.34■□□□□ 0.05
LRCH3Q96II8 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC15.34■□□□□ 0.05
LRCH3Q96II8 ABCC6P1-203ENST00000565566 1170 ntBASIC15.34■□□□□ 0.05
LRCH3Q96II8 AC112220.4-201ENST00000604982 1263 ntBASIC15.34■□□□□ 0.05
LRCH3Q96II8 MAP3K14-205ENST00000617331 1049 ntTSL 5 BASIC15.34■□□□□ 0.05
LRCH3Q96II8 AC048382.6-201ENST00000621980 1223 ntBASIC15.34■□□□□ 0.05
LRCH3Q96II8 MVK-217ENST00000639206 367 ntTSL 5 BASIC15.34■□□□□ 0.05
LRCH3Q96II8 FAM45BP-202ENST00000592932 1624 ntBASIC15.34■□□□□ 0.05
LRCH3Q96II8 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.34■□□□□ 0.05
LRCH3Q96II8 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LRCH3Q96II8 AC063926.3-201ENST00000624734 5658 ntBASIC15.34■□□□□ 0.05
LRCH3Q96II8 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LRCH3Q96II8 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
LRCH3Q96II8 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LRCH3Q96II8 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
LRCH3Q96II8 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.34■□□□□ 0.05
LRCH3Q96II8 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.05
LRCH3Q96II8 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
LRCH3Q96II8 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
LRCH3Q96II8 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.05
LRCH3Q96II8 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.05
LRCH3Q96II8 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
LRCH3Q96II8 CICP23-201ENST00000605013 2741 ntBASIC15.33■□□□□ 0.05
LRCH3Q96II8 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LRCH3Q96II8 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LRCH3Q96II8 AC022080.1-201ENST00000366255 781 ntBASIC15.33■□□□□ 0.04
LRCH3Q96II8 CCDC152-202ENST00000388827 1237 ntTSL 2 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 SMIM11A-201ENST00000399292 850 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LRCH3Q96II8 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LRCH3Q96II8 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 OR4C14P-201ENST00000440929 923 ntBASIC15.33■□□□□ 0.04
LRCH3Q96II8 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LRCH3Q96II8 AC010183.1-201ENST00000552413 559 ntTSL 4 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 AC073869.4-201ENST00000620841 800 ntBASIC15.33■□□□□ 0.04
LRCH3Q96II8 LINC01012-203ENST00000628762 743 ntTSL 5 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LRCH3Q96II8 LINC00682-202ENST00000499082 1384 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LRCH3Q96II8 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LRCH3Q96II8 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LRCH3Q96II8 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LRCH3Q96II8 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
LRCH3Q96II8 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LRCH3Q96II8 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LRCH3Q96II8 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LRCH3Q96II8 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.33■□□□□ 0.04
LRCH3Q96II8 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LRCH3Q96II8 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.33■□□□□ 0.04
LRCH3Q96II8 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
LRCH3Q96II8 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC15.32■□□□□ 0.04
LRCH3Q96II8 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRCH3Q96II8 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.32■□□□□ 0.04
LRCH3Q96II8 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
LRCH3Q96II8 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
LRCH3Q96II8 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRCH3Q96II8 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
LRCH3Q96II8 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms