Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC13.75□□□□□ -0.21
CLHC1Q8NHS4 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 MXI1-205ENST00000393134 889 ntTSL 2 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 AL157407.1-201ENST00000435784 904 ntBASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 KLF2P1-201ENST00000447438 1042 ntBASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 KRT17P7-201ENST00000451704 1104 ntBASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 AC100850.1-201ENST00000506768 649 ntBASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 DUX4L46-201ENST00000566845 751 ntBASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 WNT11-204ENST00000621122 789 ntTSL 5 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 AL358472.5-202ENST00000641448 1267 ntBASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
CLHC1Q8NHS4 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 RBM38-204ENST00000371219 760 ntTSL 2 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 HIST1H2BPS3-201ENST00000419683 341 ntBASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 NME2P1-201ENST00000426182 414 ntBASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms