Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC11.74□□□□□ -0.53
NKX2-1P43699 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC11.74□□□□□ -0.53
NKX2-1P43699 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC11.74□□□□□ -0.53
NKX2-1P43699 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC11.74□□□□□ -0.53
NKX2-1P43699 ARL16-202ENST00000570561 768 ntTSL 2 BASIC11.74□□□□□ -0.53
NKX2-1P43699 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC11.74□□□□□ -0.53
NKX2-1P43699 AL390955.2-201ENST00000603032 514 ntBASIC11.74□□□□□ -0.53
NKX2-1P43699 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC11.74□□□□□ -0.53
NKX2-1P43699 AP005019.2-201ENST00000615104 511 ntBASIC11.74□□□□□ -0.53
NKX2-1P43699 AC093028.1-201ENST00000622998 982 ntBASIC11.74□□□□□ -0.53
NKX2-1P43699 AL031719.1-201ENST00000623365 2587 ntBASIC11.74□□□□□ -0.53
NKX2-1P43699 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC11.74□□□□□ -0.53
NKX2-1P43699 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 ZNF180-201ENST00000221327 4335 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 ARHGEF10L-202ENST00000361221 4488 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 PCCB-210ENST00000471595 6090 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 PDIA3P1-201ENST00000471856 1510 ntBASIC11.74□□□□□ -0.53
NKX2-1P43699 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
NKX2-1P43699 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC11.74□□□□□ -0.53
NKX2-1P43699 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC11.74□□□□□ -0.53
NKX2-1P43699 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 AC020910.5-201ENST00000623668 1865 ntBASIC11.74□□□□□ -0.53
NKX2-1P43699 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 AC004623.1-201ENST00000624592 2127 ntBASIC11.74□□□□□ -0.53
NKX2-1P43699 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
NKX2-1P43699 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC11.74□□□□□ -0.53
NKX2-1P43699 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC11.74□□□□□ -0.53
NKX2-1P43699 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC11.74□□□□□ -0.53
NKX2-1P43699 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
NKX2-1P43699 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC11.73□□□□□ -0.53
NKX2-1P43699 PERP-201ENST00000421351 4290 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 AL353608.3-202ENST00000429953 4384 ntTSL 5 BASIC11.73□□□□□ -0.53
NKX2-1P43699 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 VMA21-202ENST00000370361 693 ntTSL 5 BASIC11.73□□□□□ -0.53
NKX2-1P43699 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC11.73□□□□□ -0.53
NKX2-1P43699 SIRPA-203ENST00000400068 4201 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 LBH-203ENST00000404397 543 ntTSL 4 BASIC11.73□□□□□ -0.53
NKX2-1P43699 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC11.73□□□□□ -0.53
NKX2-1P43699 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC11.73□□□□□ -0.53
NKX2-1P43699 HARS-202ENST00000415192 1401 ntTSL 2 BASIC11.73□□□□□ -0.53
NKX2-1P43699 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
NKX2-1P43699 METTL21AP1-201ENST00000438852 635 ntBASIC11.73□□□□□ -0.53
NKX2-1P43699 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC11.73□□□□□ -0.53
NKX2-1P43699 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC11.73□□□□□ -0.53
NKX2-1P43699 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC11.73□□□□□ -0.53
NKX2-1P43699 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC11.73□□□□□ -0.53
NKX2-1P43699 AC135586.1-201ENST00000539323 574 ntBASIC11.73□□□□□ -0.53
NKX2-1P43699 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC11.73□□□□□ -0.53
NKX2-1P43699 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC11.73□□□□□ -0.53
NKX2-1P43699 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC11.73□□□□□ -0.53
NKX2-1P43699 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC11.73□□□□□ -0.53
NKX2-1P43699 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC11.73□□□□□ -0.53
NKX2-1P43699 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC11.73□□□□□ -0.53
NKX2-1P43699 AL590560.3-201ENST00000623350 461 ntBASIC11.73□□□□□ -0.53
NKX2-1P43699 MIR34AHG-203ENST00000635687 4211 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC11.73□□□□□ -0.53
NKX2-1P43699 COL3A1-201ENST00000304636 5543 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 MPP2-219ENST00000612133 4938 ntTSL 5 BASIC11.73□□□□□ -0.53
NKX2-1P43699 SLC4A7-203ENST00000425128 7970 ntTSL 5 BASIC11.73□□□□□ -0.53
NKX2-1P43699 WNT9A-201ENST00000272164 3971 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 SEMA4D-212ENST00000450295 5684 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 ZNF646-202ENST00000394979 8118 ntAPPRIS ALT2 BASIC11.73□□□□□ -0.53
NKX2-1P43699 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
NKX2-1P43699 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
NKX2-1P43699 MTMR11-201ENST00000369140 2324 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
NKX2-1P43699 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
NKX2-1P43699 ERBB2-202ENST00000406381 4564 ntTSL 5 BASIC11.72□□□□□ -0.53
NKX2-1P43699 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
NKX2-1P43699 INHBA-201ENST00000242208 6064 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
NKX2-1P43699 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
NKX2-1P43699 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
NKX2-1P43699 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
NKX2-1P43699 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC11.72□□□□□ -0.53
NKX2-1P43699 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
NKX2-1P43699 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
NKX2-1P43699 ITPRIP-201ENST00000278071 6807 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
NKX2-1P43699 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms