Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 COPZ1-206ENST00000549043 1232 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 DSCR9-203ENST00000581640 472 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A3P12111 AC104506.1-201ENST00000609247 429 ntBASIC14.16□□□□□ -0.14
COL6A3P12111 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A3P12111 ZCCHC9-203ENST00000407610 1555 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
COL6A3P12111 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A3P12111 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
COL6A3P12111 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
COL6A3P12111 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A3P12111 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A3P12111 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.15□□□□□ -0.14
COL6A3P12111 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.15□□□□□ -0.14
COL6A3P12111 ZNF343-203ENST00000381253 819 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A3P12111 MARCKSL1P2-201ENST00000401037 976 ntBASIC14.15□□□□□ -0.14
COL6A3P12111 HTATSF1P1-201ENST00000432008 984 ntBASIC14.15□□□□□ -0.14
COL6A3P12111 AF274858.2-201ENST00000446370 617 ntTSL 2 BASIC14.15□□□□□ -0.14
COL6A3P12111 FDPS-206ENST00000467076 1178 ntAPPRIS ALT1 TSL 3 BASIC14.15□□□□□ -0.14
COL6A3P12111 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC14.15□□□□□ -0.14
COL6A3P12111 MRPL34-206ENST00000602206 603 ntTSL 3 BASIC14.15□□□□□ -0.14
COL6A3P12111 AP003419.3-201ENST00000613900 527 ntTSL 3 BASIC14.15□□□□□ -0.14
COL6A3P12111 AC137723.2-201ENST00000623540 398 ntBASIC14.15□□□□□ -0.14
COL6A3P12111 AC099795.2-201ENST00000639582 440 ntBASIC14.15□□□□□ -0.14
COL6A3P12111 KIR2DL4-204ENST00000359085 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A3P12111 AKTIP-201ENST00000300245 2133 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
COL6A3P12111 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A3P12111 NOMO2-210ENST00000620440 1360 ntTSL 5 BASIC14.15□□□□□ -0.14
COL6A3P12111 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A3P12111 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.15□□□□□ -0.14
COL6A3P12111 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.15□□□□□ -0.14
COL6A3P12111 CSMD2-202ENST00000338325 1544 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A3P12111 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A3P12111 EGLN3-205ENST00000547327 2849 ntBASIC14.15□□□□□ -0.14
COL6A3P12111 IL1RN-205ENST00000409930 848 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A3P12111 LINC00313-206ENST00000441283 448 ntTSL 3 BASIC14.15□□□□□ -0.14
COL6A3P12111 SEPT4-AS1-203ENST00000580769 1000 ntTSL 3 BASIC14.15□□□□□ -0.14
COL6A3P12111 RPL37A-212ENST00000600880 425 ntTSL 2 BASIC14.15□□□□□ -0.14
COL6A3P12111 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A3P12111 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A3P12111 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.15□□□□□ -0.14
COL6A3P12111 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A3P12111 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A3P12111 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.15□□□□□ -0.14
COL6A3P12111 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
COL6A3P12111 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC14.15□□□□□ -0.14
COL6A3P12111 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.15
COL6A3P12111 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A3P12111 MTND6P11-201ENST00000431890 483 ntBASIC14.14□□□□□ -0.15
COL6A3P12111 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A3P12111 AP000343.1-201ENST00000440602 385 ntBASIC14.14□□□□□ -0.15
COL6A3P12111 AL033381.2-201ENST00000603854 732 ntBASIC14.14□□□□□ -0.15
COL6A3P12111 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A3P12111 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A3P12111 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.14□□□□□ -0.15
COL6A3P12111 SKAP1-208ENST00000584924 1477 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
COL6A3P12111 CKAP2-202ENST00000378034 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A3P12111 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A3P12111 AC106799.1-201ENST00000503188 1676 ntTSL 2 BASIC14.14□□□□□ -0.15
COL6A3P12111 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A3P12111 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC14.14□□□□□ -0.15
COL6A3P12111 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A3P12111 RNASE8-201ENST00000308227 634 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
COL6A3P12111 THYN1-202ENST00000352327 835 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A3P12111 S100A1-203ENST00000368698 784 ntTSL 2 BASIC14.14□□□□□ -0.15
COL6A3P12111 AC244197.2-201ENST00000370438 655 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A3P12111 AP001625.3-201ENST00000416179 449 ntTSL 2 BASIC14.14□□□□□ -0.15
COL6A3P12111 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC14.14□□□□□ -0.15
COL6A3P12111 AC004969.1-201ENST00000471553 578 ntTSL 5 BASIC14.14□□□□□ -0.15
COL6A3P12111 IGKV1-8-201ENST00000495489 398 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
COL6A3P12111 AC006547.1-207ENST00000601746 930 ntTSL 5 BASIC14.14□□□□□ -0.15
COL6A3P12111 AC006547.1-210ENST00000609644 589 ntTSL 5 BASIC14.14□□□□□ -0.15
COL6A3P12111 AL160408.6-201ENST00000632063 1257 ntTSL 5 BASIC14.14□□□□□ -0.15
COL6A3P12111 AL590094.1-206ENST00000635959 478 ntTSL 5 BASIC14.14□□□□□ -0.15
COL6A3P12111 AL590094.1-209ENST00000637260 499 ntTSL 5 BASIC14.14□□□□□ -0.15
COL6A3P12111 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A3P12111 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.14□□□□□ -0.15
COL6A3P12111 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
COL6A3P12111 ACE3P-201ENST00000423435 1973 ntBASIC14.14□□□□□ -0.15
COL6A3P12111 AC073585.1-201ENST00000368895 1328 ntBASIC14.14□□□□□ -0.15
COL6A3P12111 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A3P12111 ZNF793-205ENST00000587143 1488 ntAPPRIS P1 TSL 4 BASIC14.14□□□□□ -0.15
COL6A3P12111 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.14□□□□□ -0.15
COL6A3P12111 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.14□□□□□ -0.15
COL6A3P12111 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A3P12111 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14.14□□□□□ -0.15
COL6A3P12111 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A3P12111 OR6M1-201ENST00000309154 1053 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
COL6A3P12111 U3.49-201ENST00000391065 214 ntBASIC14.14□□□□□ -0.15
COL6A3P12111 AC064836.1-201ENST00000405197 704 ntBASIC14.14□□□□□ -0.15
COL6A3P12111 TGFA-207ENST00000450929 950 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A3P12111 AL353807.2-201ENST00000456382 220 ntTSL 5 BASIC14.14□□□□□ -0.15
COL6A3P12111 SNORA47-201ENST00000458862 138 ntBASIC14.14□□□□□ -0.15
COL6A3P12111 COQ10BP2-201ENST00000513804 724 ntBASIC14.14□□□□□ -0.15
COL6A3P12111 FAM86B1-215ENST00000533513 725 ntTSL 5 BASIC14.14□□□□□ -0.15
COL6A3P12111 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC14.14□□□□□ -0.15
COL6A3P12111 AL356423.1-201ENST00000604953 538 ntBASIC14.14□□□□□ -0.15
COL6A3P12111 AC092687.3-201ENST00000606907 393 ntTSL 5 BASIC14.14□□□□□ -0.15
COL6A3P12111 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A3P12111 PSAT1-201ENST00000347159 1411 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL6A3P12111 CDK7-202ENST00000502604 1455 ntTSL 5 BASIC14.13□□□□□ -0.15
COL6A3P12111 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms