Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HMGB1P09429 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HMGB1P09429 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HMGB1P09429 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC16.78■□□□□ 0.28
HMGB1P09429 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HMGB1P09429 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
HMGB1P09429 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC16.78■□□□□ 0.28
HMGB1P09429 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 DNAJB5-204ENST00000454002 2818 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
HMGB1P09429 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HMGB1P09429 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB1P09429 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB1P09429 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB1P09429 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB1P09429 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.28
HMGB1P09429 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB1P09429 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB1P09429 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB1P09429 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
HMGB1P09429 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
HMGB1P09429 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB1P09429 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB1P09429 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB1P09429 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC16.77■□□□□ 0.28
HMGB1P09429 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC16.77■□□□□ 0.28
HMGB1P09429 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC16.77■□□□□ 0.28
HMGB1P09429 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
HMGB1P09429 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB1P09429 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.77■□□□□ 0.28
HMGB1P09429 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC16.77■□□□□ 0.28
HMGB1P09429 AC006033.1-201ENST00000440505 426 ntBASIC16.77■□□□□ 0.28
HMGB1P09429 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC16.77■□□□□ 0.28
HMGB1P09429 AC091804.1-201ENST00000486888 567 ntBASIC16.77■□□□□ 0.28
HMGB1P09429 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HMGB1P09429 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC16.77■□□□□ 0.28
HMGB1P09429 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC16.77■□□□□ 0.28
HMGB1P09429 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC16.77■□□□□ 0.28
HMGB1P09429 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
HMGB1P09429 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
HMGB1P09429 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
HMGB1P09429 AC100757.4-201ENST00000626934 759 ntBASIC16.77■□□□□ 0.28
HMGB1P09429 NAP1L6-202ENST00000641404 1222 ntBASIC16.77■□□□□ 0.28
HMGB1P09429 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
HMGB1P09429 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HMGB1P09429 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HMGB1P09429 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC16.77■□□□□ 0.27
HMGB1P09429 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HMGB1P09429 LINC01165-201ENST00000445190 1623 ntBASIC16.77■□□□□ 0.27
HMGB1P09429 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HMGB1P09429 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
HMGB1P09429 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HMGB1P09429 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
HMGB1P09429 HADH-202ENST00000403312 1752 ntTSL 5 BASIC16.77■□□□□ 0.27
HMGB1P09429 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC16.76■□□□□ 0.27
HMGB1P09429 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC16.76■□□□□ 0.27
HMGB1P09429 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
HMGB1P09429 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC16.76■□□□□ 0.27
HMGB1P09429 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 RNA5SP359-201ENST00000364838 113 ntBASIC16.76■□□□□ 0.27
HMGB1P09429 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 AL391647.1-201ENST00000395664 511 ntBASIC16.76■□□□□ 0.27
HMGB1P09429 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC16.76■□□□□ 0.27
HMGB1P09429 AL008707.1-201ENST00000422498 534 ntBASIC16.76■□□□□ 0.27
HMGB1P09429 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC16.76■□□□□ 0.27
HMGB1P09429 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC16.76■□□□□ 0.27
HMGB1P09429 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC16.76■□□□□ 0.27
HMGB1P09429 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
HMGB1P09429 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms