Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 AC139493.2-202ENST00000510155 544 ntTSL 3 BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 NMNAT3-212ENST00000511444 873 ntTSL 3 BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 AP001102.1-201ENST00000528959 409 ntBASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 GRAPL-204ENST00000577213 866 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 RN7SL480P-201ENST00000581481 294 ntBASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 AL590094.1-206ENST00000635959 478 ntTSL 5 BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 AL590094.1-209ENST00000637260 499 ntTSL 5 BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 NME1-209ENST00000511355 1645 ntTSL 5 BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 HIST2H2BE-201ENST00000369155 2194 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 HAO1-201ENST00000378789 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 ZFHX4-AS1-201ENST00000518143 1711 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 TAC4-203ENST00000352793 564 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 FOLR1-204ENST00000393681 1061 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 SERF2-204ENST00000402131 586 ntTSL 2 BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 RFNG-202ENST00000429557 994 ntTSL 5 BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 RBM14-205ENST00000443702 732 ntTSL 3 BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 TMA16-204ENST00000508268 608 ntTSL 2 BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 AC091132.6-201ENST00000586411 826 ntTSL 5 BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 BX322562.1-201ENST00000617004 561 ntBASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 AL928654.5-201ENST00000624831 2501 ntBASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 SFPQP1-201ENST00000446621 1786 ntBASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 LINC01744-201ENST00000457698 2042 ntTSL 2 BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 EDEM2-201ENST00000374491 1756 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 PAEP-201ENST00000277508 821 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 AC008080.1-201ENST00000311067 1058 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 MIR339-201ENST00000362153 94 ntBASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 IGLJ1-201ENST00000390320 127 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 CHN2-214ENST00000439711 755 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 AC022121.1-201ENST00000484584 579 ntBASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 AC026412.1-206ENST00000502273 206 ntBASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 CLNK-203ENST00000507719 1143 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 NR1I2-206ENST00000638727 1194 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 CYP2B6-202ENST00000593831 1426 ntTSL 2 BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC17.66■□□□□ 0.42
SHANK3Q9BYB0 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 CCDC138-203ENST00000412964 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 EDDM3B-201ENST00000326783 896 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 SNORA50D-201ENST00000408059 134 ntBASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 HDHD5-AS1-202ENST00000431923 616 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 AL662899.2-201ENST00000503322 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 AL161668.2-201ENST00000531638 492 ntTSL 5 BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 DTWD1-205ENST00000558653 1131 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 Metazoa_SRP.147-201ENST00000576563 312 ntBASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 CLPP-205ENST00000596605 646 ntTSL 2 BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 MIEF1-215ENST00000637854 213 ntBASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 AL157832.2-205ENST00000597245 1649 ntBASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 APEX1-201ENST00000216714 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SHANK3Q9BYB0 MST1P2-201ENST00000457982 2291 ntBASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms