Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 CAP2P1-201ENST00000557743 1390 ntBASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 RN7SL67P-201ENST00000492147 296 ntBASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 CFL1-206ENST00000527344 962 ntTSL 2 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 AC009145.4-201ENST00000625119 1294 ntBASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 FER1L4-210ENST00000615531 5998 ntBASIC14.47□□□□□ -0.09
SHROOM3Q8TF72 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 AC068587.6-202ENST00000641839 5619 ntBASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC14.46□□□□□ -0.09
SHROOM3Q8TF72 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
SHROOM3Q8TF72 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
SHROOM3Q8TF72 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
SHROOM3Q8TF72 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
SHROOM3Q8TF72 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
SHROOM3Q8TF72 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
SHROOM3Q8TF72 SALL4P6-201ENST00000429385 1691 ntBASIC14.46□□□□□ -0.1
SHROOM3Q8TF72 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
SHROOM3Q8TF72 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC14.46□□□□□ -0.1
SHROOM3Q8TF72 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC14.46□□□□□ -0.1
SHROOM3Q8TF72 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
SHROOM3Q8TF72 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.1
SHROOM3Q8TF72 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 DUTP3-201ENST00000450025 415 ntBASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 SUPT4H1P2-201ENST00000501248 353 ntBASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 AC026803.1-201ENST00000569130 274 ntBASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 KRT18P8-201ENST00000581937 1246 ntBASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 CMC2-224ENST00000630396 481 ntTSL 5 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 NAP1L6-202ENST00000641404 1222 ntBASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
SHROOM3Q8TF72 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms