Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC13.82□□□□□ -0.2
FOXA1P55317 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC13.82□□□□□ -0.2
FOXA1P55317 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 ABCD1P2-201ENST00000429313 1601 ntBASIC13.82□□□□□ -0.2
FOXA1P55317 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
FOXA1P55317 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
FOXA1P55317 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
FOXA1P55317 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC13.81□□□□□ -0.2
FOXA1P55317 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC13.81□□□□□ -0.2
FOXA1P55317 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
FOXA1P55317 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC13.81□□□□□ -0.2
FOXA1P55317 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
FOXA1P55317 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 ANKRD19P-201ENST00000338192 862 ntBASIC13.81□□□□□ -0.2
FOXA1P55317 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
FOXA1P55317 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC13.81□□□□□ -0.2
FOXA1P55317 HMGA1P1-201ENST00000415560 1062 ntBASIC13.81□□□□□ -0.2
FOXA1P55317 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC13.81□□□□□ -0.2
FOXA1P55317 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
FOXA1P55317 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC13.81□□□□□ -0.2
FOXA1P55317 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 CTBP2P5-201ENST00000454986 1264 ntBASIC13.81□□□□□ -0.2
FOXA1P55317 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC13.81□□□□□ -0.2
FOXA1P55317 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 PGAM1P5-201ENST00000548011 764 ntBASIC13.81□□□□□ -0.2
FOXA1P55317 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC13.81□□□□□ -0.2
FOXA1P55317 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC13.81□□□□□ -0.2
FOXA1P55317 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC13.81□□□□□ -0.2
FOXA1P55317 AC100827.2-201ENST00000563214 1194 ntBASIC13.81□□□□□ -0.2
FOXA1P55317 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC13.81□□□□□ -0.2
FOXA1P55317 NAA38-206ENST00000576384 424 ntTSL 2 BASIC13.81□□□□□ -0.2
FOXA1P55317 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.81□□□□□ -0.2
FOXA1P55317 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC13.81□□□□□ -0.2
FOXA1P55317 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
FOXA1P55317 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC13.81□□□□□ -0.2
FOXA1P55317 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
FOXA1P55317 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC13.81□□□□□ -0.2
FOXA1P55317 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC13.81□□□□□ -0.2
FOXA1P55317 AC126335.2-201ENST00000623362 4637 ntBASIC13.81□□□□□ -0.2
FOXA1P55317 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
FOXA1P55317 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA1P55317 AC061965.1-201ENST00000560524 1465 ntBASIC13.8□□□□□ -0.2
FOXA1P55317 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC13.8□□□□□ -0.2
FOXA1P55317 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC13.8□□□□□ -0.2
FOXA1P55317 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
FOXA1P55317 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA1P55317 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC13.8□□□□□ -0.2
FOXA1P55317 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA1P55317 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA1P55317 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC13.8□□□□□ -0.2
FOXA1P55317 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
FOXA1P55317 SALL4P6-201ENST00000429385 1691 ntBASIC13.8□□□□□ -0.2
FOXA1P55317 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA1P55317 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA1P55317 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA1P55317 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA1P55317 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.8□□□□□ -0.2
FOXA1P55317 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA1P55317 AC092580.1-201ENST00000433998 658 ntBASIC13.8□□□□□ -0.2
FOXA1P55317 OR2R1P-201ENST00000441404 914 ntBASIC13.8□□□□□ -0.2
FOXA1P55317 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC13.8□□□□□ -0.2
FOXA1P55317 HNRNPA1P36-201ENST00000521313 955 ntBASIC13.8□□□□□ -0.2
FOXA1P55317 AC023310.1-201ENST00000554836 735 ntBASIC13.8□□□□□ -0.2
FOXA1P55317 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA1P55317 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC13.8□□□□□ -0.2
FOXA1P55317 AC009884.2-201ENST00000603110 324 ntBASIC13.8□□□□□ -0.2
FOXA1P55317 DDX5-235ENST00000630471 473 ntTSL 4 BASIC13.8□□□□□ -0.2
FOXA1P55317 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA1P55317 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
FOXA1P55317 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms