Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CR1P49238 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CR1P49238 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CR1P49238 CROT-203ENST00000419147 2959 ntTSL 2 BASIC12.61□□□□□ -0.39
CX3CR1P49238 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CR1P49238 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CR1P49238 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CR1P49238 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CR1P49238 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC12.61□□□□□ -0.39
CX3CR1P49238 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CR1P49238 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CR1P49238 AC073548.1-201ENST00000624088 1882 ntBASIC12.61□□□□□ -0.39
CX3CR1P49238 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC12.61□□□□□ -0.39
CX3CR1P49238 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
CX3CR1P49238 AC244394.1-201ENST00000435000 1665 ntBASIC12.61□□□□□ -0.39
CX3CR1P49238 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC12.61□□□□□ -0.39
CX3CR1P49238 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
CX3CR1P49238 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
CX3CR1P49238 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
CX3CR1P49238 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC12.6□□□□□ -0.39
CX3CR1P49238 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC12.6□□□□□ -0.39
CX3CR1P49238 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC12.6□□□□□ -0.39
CX3CR1P49238 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC12.6□□□□□ -0.39
CX3CR1P49238 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC12.6□□□□□ -0.39
CX3CR1P49238 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC12.6□□□□□ -0.39
CX3CR1P49238 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC12.6□□□□□ -0.39
CX3CR1P49238 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
CX3CR1P49238 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 RPF1-202ENST00000370656 724 ntTSL 2 BASIC12.6□□□□□ -0.39
CX3CR1P49238 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC12.6□□□□□ -0.39
CX3CR1P49238 AL035633.1-201ENST00000406139 838 ntBASIC12.6□□□□□ -0.39
CX3CR1P49238 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
CX3CR1P49238 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC12.6□□□□□ -0.39
CX3CR1P49238 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC12.6□□□□□ -0.39
CX3CR1P49238 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC12.6□□□□□ -0.39
CX3CR1P49238 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC12.6□□□□□ -0.39
CX3CR1P49238 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC12.6□□□□□ -0.39
CX3CR1P49238 CR383656.12-201ENST00000549567 513 ntBASIC12.6□□□□□ -0.39
CX3CR1P49238 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC12.6□□□□□ -0.39
CX3CR1P49238 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC12.6□□□□□ -0.39
CX3CR1P49238 RPS24-214ENST00000613865 538 ntTSL 5 BASIC12.6□□□□□ -0.39
CX3CR1P49238 BAP1-211ENST00000615113 489 ntBASIC12.6□□□□□ -0.39
CX3CR1P49238 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC12.6□□□□□ -0.39
CX3CR1P49238 AC008687.7-202ENST00000637404 953 ntBASIC12.6□□□□□ -0.39
CX3CR1P49238 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
CX3CR1P49238 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
CX3CR1P49238 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
CX3CR1P49238 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
CX3CR1P49238 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
CX3CR1P49238 AC005562.1-201ENST00000583030 3219 ntBASIC12.6□□□□□ -0.39
CX3CR1P49238 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CR1P49238 AL023775.1-201ENST00000454907 1746 ntBASIC12.59□□□□□ -0.39
CX3CR1P49238 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CR1P49238 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CR1P49238 LAP3P2-201ENST00000454686 1454 ntBASIC12.59□□□□□ -0.39
CX3CR1P49238 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC12.59□□□□□ -0.39
CX3CR1P49238 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CR1P49238 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CR1P49238 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CR1P49238 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CR1P49238 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC12.59□□□□□ -0.39
CX3CR1P49238 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC12.59□□□□□ -0.39
CX3CR1P49238 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CR1P49238 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CR1P49238 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CR1P49238 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CR1P49238 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CR1P49238 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CR1P49238 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CR1P49238 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CR1P49238 REXO1L6P-201ENST00000603433 1515 ntBASIC12.59□□□□□ -0.39
CX3CR1P49238 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CR1P49238 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CX3CR1P49238 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms