Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PCDHB17P-202ENST00000623466 3066 ntBASIC11.78□□□□□ -0.52
CDX1P47902 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC11.78□□□□□ -0.52
CDX1P47902 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 MEP1A-201ENST00000230588 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 KRT42P-202ENST00000438131 2895 ntTSL 2 BASIC11.78□□□□□ -0.52
CDX1P47902 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
CDX1P47902 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 CXCR5-201ENST00000292174 4431 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 PCDHGB8P-201ENST00000502926 1973 ntBASIC11.78□□□□□ -0.52
CDX1P47902 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC11.78□□□□□ -0.52
CDX1P47902 FAM197Y7-201ENST00000432892 766 ntBASIC11.78□□□□□ -0.52
CDX1P47902 BNIP3P42-201ENST00000454982 569 ntBASIC11.78□□□□□ -0.52
CDX1P47902 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
CDX1P47902 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC11.78□□□□□ -0.52
CDX1P47902 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC11.78□□□□□ -0.52
CDX1P47902 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
CDX1P47902 AC078819.1-201ENST00000547454 765 ntBASIC11.78□□□□□ -0.52
CDX1P47902 AC012085.1-201ENST00000548270 765 ntBASIC11.78□□□□□ -0.52
CDX1P47902 AL583810.1-201ENST00000553344 1045 ntBASIC11.78□□□□□ -0.52
CDX1P47902 DUX4L45-201ENST00000566406 1057 ntBASIC11.78□□□□□ -0.52
CDX1P47902 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC11.78□□□□□ -0.52
CDX1P47902 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC11.78□□□□□ -0.52
CDX1P47902 BNIP3P29-201ENST00000598302 571 ntBASIC11.78□□□□□ -0.52
CDX1P47902 AC011447.5-201ENST00000616168 564 ntBASIC11.78□□□□□ -0.52
CDX1P47902 AC138951.2-201ENST00000623455 1161 ntBASIC11.78□□□□□ -0.52
CDX1P47902 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC11.78□□□□□ -0.52
CDX1P47902 COG1-201ENST00000299886 3079 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 CCDC144NL-201ENST00000327925 2806 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC11.78□□□□□ -0.52
CDX1P47902 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 AL360270.3-201ENST00000609118 1348 ntBASIC11.78□□□□□ -0.52
CDX1P47902 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC11.78□□□□□ -0.52
CDX1P47902 CROT-203ENST00000419147 2959 ntTSL 2 BASIC11.78□□□□□ -0.52
CDX1P47902 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC11.78□□□□□ -0.52
CDX1P47902 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
CDX1P47902 TRPM5-203ENST00000533060 3562 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 BTNL8-201ENST00000231229 2229 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
CDX1P47902 NRXN1-259ENST00000637511 3651 ntTSL 5 BASIC11.78□□□□□ -0.52
CDX1P47902 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CDX1P47902 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
CDX1P47902 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC11.77□□□□□ -0.52
CDX1P47902 MEX3B-202ENST00000558133 4333 ntBASIC11.77□□□□□ -0.52
CDX1P47902 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
CDX1P47902 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC11.77□□□□□ -0.52
CDX1P47902 GRAMD1B-216ENST00000638157 3849 ntTSL 5 BASIC11.77□□□□□ -0.52
CDX1P47902 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC11.77□□□□□ -0.52
CDX1P47902 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
CDX1P47902 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
CDX1P47902 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC11.77□□□□□ -0.52
CDX1P47902 KLF7-204ENST00000423015 1788 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
CDX1P47902 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CDX1P47902 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CDX1P47902 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
CDX1P47902 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
CDX1P47902 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
CDX1P47902 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
CDX1P47902 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
CDX1P47902 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC11.77□□□□□ -0.53
CDX1P47902 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CDX1P47902 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
CDX1P47902 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CDX1P47902 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CDX1P47902 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
CDX1P47902 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CDX1P47902 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC11.77□□□□□ -0.53
CDX1P47902 AC026954.1-201ENST00000429771 1293 ntBASIC11.77□□□□□ -0.53
CDX1P47902 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC11.77□□□□□ -0.53
CDX1P47902 AC245100.3-201ENST00000441281 285 ntBASIC11.77□□□□□ -0.53
CDX1P47902 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC11.77□□□□□ -0.53
CDX1P47902 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC11.77□□□□□ -0.53
CDX1P47902 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC11.77□□□□□ -0.53
CDX1P47902 DUX4L47-201ENST00000566374 394 ntBASIC11.77□□□□□ -0.53
CDX1P47902 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC11.77□□□□□ -0.53
CDX1P47902 AC010328.2-201ENST00000597698 1111 ntBASIC11.77□□□□□ -0.53
CDX1P47902 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC11.77□□□□□ -0.53
CDX1P47902 SERF2-217ENST00000630046 862 ntTSL 5 BASIC11.77□□□□□ -0.53
CDX1P47902 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
CDX1P47902 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
CDX1P47902 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
CDX1P47902 PCDHA5-203ENST00000614258 4248 ntBASIC11.77□□□□□ -0.53
CDX1P47902 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.53
CDX1P47902 TUBB1P2-201ENST00000422712 1306 ntBASIC11.77□□□□□ -0.53
CDX1P47902 TUBB1P1-201ENST00000503144 1300 ntBASIC11.77□□□□□ -0.53
CDX1P47902 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
CDX1P47902 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms